Inhibition mechanism of recombinant expression by 5′terminal secondary structure of L-aspartate-α-decarboxylase gene and elimination strategy

  • LINGHU Mei ,
  • HAN Laichuang ,
  • ZHOU Zhemin ,
  • CUI Wenjing
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  • 1 (School of Biotechnology, Jiangnan University, Wuxi 214122, China)
    2 (Key Laboratory of Industrial Biotechnology, Ministry of Education(Jiangnan University), Wuxi 214122, China)

Received date: 2019-04-02

  Online published: 2019-09-23

Abstract

The purpose of this study was to explore the mechanism of translation inhibition of L-aspartate-α-decarboxylase (PanD) from Tribolium castaneum and develop a novel strategy to eliminate the inhibition. Firstly, the inhibited translation was verified by efficient expression elements, and the mechanism of inhibition was analyzed in Bacillus subtilis. Meanwhile, sfGFP was fused to investigate its effect on translation inhibition to screen reduced fusion peptides that had strong compatibility with PanD. The results showed that the strongly constitutive promoter could not mediate high expression of PanD and displayed translation inhibition. The analysis confirmed that the 5′ coding region and 5′UTR of panD post-transcriptional mRNA formed an inhibitory secondary structure and reduced the initiation efficiency of translation. Moreover, when the two reporter genes and part of the N-terminal sequence of the reporter gene were used as insulating peptides to fuse with the N-terminal of PanD in individual, the expression level of the recombinant protein could be improved, and the translational inhibition caused by the cis-acting effect within the mRNA molecule was eliminated. Overall, this study provides a basis to systematically design a universal peptide insulator to stabilize gene expression in microbial synthetic chassis.

Cite this article

LINGHU Mei , HAN Laichuang , ZHOU Zhemin , CUI Wenjing . Inhibition mechanism of recombinant expression by 5′terminal secondary structure of L-aspartate-α-decarboxylase gene and elimination strategy[J]. Food and Fermentation Industries, 2019 , 45(16) : 1 -10 . DOI: 10.13995/j.cnki.11-1802/ts.020730

References

[1] GU Y, XU X, WU Y, et al. Advances and prospects of Bacillus subtilis cellular factories: From rational design to industrial applications [J]. Metabolic Engineering, 2018, 50:109-121.
[2] VAN DIJL J M, HECKER M. Bacillus subtilis: From soil bacterium to super-secreting cell factory [J]. Microbial Cell Factories, 2013, 12(1): 3.
[3] CUI W, HAN L, SUO F, et al. Exploitation of Bacillus subtilis as a robust workhorse for production of heterozygous proteins and beyond [J]. World Journal of Microbiology and Biotechnology, 2018, 34(10): 145.
[4] CHEN P T, CHEN Y C, LIN Y Y, et al. Strategy for efficient production of recombinant Staphylococcus epidermidis lipase in Bacillus subtilis [J]. Biochemical Engineering Journal, 2015, 103:152-157.
[5] WESTERS L, WESTERS H, QUAX W J. Bacillus subtilis as cell factory for pharmaceutical proteins: A biotechnological approach to optimize the host organism [J]. Biochimica et Biophysica Acta(BBA)-Molecular Cell Research, 2004, 1 694(1-3): 299-310.
[6] MENG F, ZHU X, NIE T, et al. Enhanced expression of pullulanase in Bacillus subtilis by new strong promoters mined from transcriptome data, both alone and in combination [J]. Frontiers in Microbiology, 2018, 9(2 635): 11.
[7] SEGALL-SHAPIRO T H, SONTAG E D, VOIGT C A. Engineered promoters enable constant gene expression at any copy number in bacteria [J]. Nature Biotechnology, 2018, 36(4): 352-358.
[8] MUTALIK V K, GUIMARAES J C, CAMBRAY G, et al. Precise and reliable gene expression via standard transcription and translation initiation elements [J]. Nature Methods, 2013, 10(4): 354.
[9] CUI W, SUO F, CHENG J, et al. Stepwise modifications of genetic parts reinforce the secretory production of nattokinase in Bacillus subtilis [J]. Microbial Biotechnology, 2018, 11(5): 930-942.
[10] JAN J, VALLE F, BOLIVAR F, et al. Construction of protein overproducer strains in Bacillus subtilis by an integrative approach [J]. Applied Microbiology and Biotechnology, 2001, 55(1): 69-75.
[11] GUAN C, CUI W, CHENG J, et al. Development of an efficient autoinducible expression system by promoter engineering in Bacillus subtilis [J]. Microbial Cell Factories, 2016, 15(1): 66.
[12] ZHANG K, SU L, DUAN X, et al. High-level extracellular protein production in Bacillus subtilis using an optimized dual-promoter expression system [J]. Microbial Cell Factories, 2017, 16(1): 32.
[13] GUIZIOU S, SAUVEPLANE V, CHANG H J, et al. A part toolbox to tune genetic expression in Bacillus subtilis [J]. Nucleic Acids Research, 2016, 44(15): 7 495-7 508.
[14] LITHWICK G, MARGALIT H. Hierarchy of sequence-dependent features associated with prokaryotic translation [J]. Genome Research, 2003, 13(12): 2 665-2 673.
[15] WU J, LEI J, ZHANG L, et al. Improving production and bioactivity of recombinant human disintegrin domain of ADAM15 (rhADAM15) in Escherichia coli [J]. Acta Microbiologica Sinica, 2008, 48(8): 1 067-1 074.
[16] BURGESS-BROWN N A, SHARMA S, SOBOTT F, et al. Codon optimization can improve expression of human genes in Escherichia coli: A multi-gene study [J]. Protein Expression and Purification, 2008, 59(1): 94-102.
[17] NOβMANN M, PIEPER J, HILLMANN F, et al. Generation of an arginine-tRNA-adapted Saccharomyces cerevisiae strain for effective heterologous protein expression [J]. Current Genetics, 2018, 64(3): 589-598.
[18] MACDONALD L E, DURBIN R K, DUNN J J, et al. Characterization of 2 types of termination signal for Bacteriophage T7 RNA polymerase [J]. Journal of Molecular Biology, 1994, 238(2): 145-158.
[19] OSTERMAN I A, EVFRATOV S A, SERGIEV P V, et al. Comparison of mRNA features affecting translation initiation and reinitiation [J]. Nucleic Acids Research, 2013, 41(1): 474-486.
[20] KOSURI S, GOODMAN D B, CAMBRAY G, et al. Composability of regulatory sequences controlling transcription and translation in Escherichia coli [J]. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110(34): 14 024-14 029.
[21] ESPAH BORUJENI A, CETNAR D, FARASAT I, et al. Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences [J]. Nucleic Acids Research, 2017, 45(9): 5 437-5 448.
[22] DEL VECCHIO D. Modularity, context-dependence, and insulation in engineered biological circuits [J]. Trends in Biotechnology, 2015, 33(2): 111-119.
[23] GIBSON D G, YOUNG L, CHUANG R Y, et al. Enzymatic assembly of DNA molecules up to several hundred kilobases [J]. Nature Methods, 2009, 6(5): 343.
[24] SPIZIZEN J. Transformation of Biochemically deficient Strains of Bacillus subtilis by deoxyribonucleate [J]. Proceedings of the National Academy of Sciences of the United States of America, 1958, 44(10): 1 072-1 078.
[25] 杨扬,秦强,郭伟忠. 苯基异硫氰酸酯衍生氨基酸的高效液相色谱分析[J]. 色谱, 1994,12(4): 295-296.
[26] RAMJEE M K, GENSCHEL U, ABELL C, et al. Escherichia coli L-aspartate-alpha-decarboxylase: Preprotein processing and observation of reaction intermediates by electrospray mass spectrometry [J]. Biochemical Journal, 1997, 323(3): 661-669.
[27] 高宇. 一釜双酶法转化富马酸制备β-丙氨酸催化体系的构建及工艺优化[D]. 无锡:江南大学, 2017.
[28] WITTIG I, KARAS M, SCHAEGGER H. High resolution clear native electrophoresis for In-gel functional assays and fluorescence studies of membrane protein complexes [J]. Molecular & Cellular Proteomics, 2007, 6(7): 1 215-1 225.
[29] QIAN Y, LIU J, SONG W, et al. Production of β-alanine from fumaric acid using a dual-enzyme cascade [J]. ChemCatChem, 2018, 10(21): 4 984-4 991.
[30] GUAN C, CUI W, CHENG J, et al. Construction of a highly active secretory expression system via an engineered dual promoter and a highly efficient signal peptide in Bacillus subtilis [J]. New Biotechnology, 2016, 33(3): 372-379.
[31] ZONG Y, ZHANG H M, LYU C, et al. Insulated transcriptional elements enable precise design of genetic circuits [J]. Nature Communications, 2017, 8(1): 52.
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