Bacterial community structure and lactic acid bacterial taxa in Zha-chili from Tianmen region

  • XI La ,
  • XIANG Fanshu ,
  • ZHANG Yan ,
  • ZHANG Haibo ,
  • GUO Zhuang
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  • 1(Hubei Provincial Engineering and Technology Research Center for Food Ingredients, Hubei University of Arts and Science, Xiangyang 441053, China)
    2(Xiangyang Lactic Acid Bacteria Biotechnology and Engineering Key Laboratory, Hubei University of Arts and Science, Xiangyang 441053, China)
    3(Research Institute of Biotechnology, Angel Yeast Co.Ltd., Yichang 443003, China)

Received date: 2021-07-10

  Revised date: 2022-01-14

  Online published: 2022-10-01

Abstract

The bacterial community structure and function of Zha-chili from Tianmen region were analyzed by MiSeq high-throughput sequencing and PICRUSt software, respectively, and the lactic acid bacteria were isolated, identified and preserved by a pure culture method. Fifteen samples were divided into two clusters. The results showed that the bacteria in cluster I were mainly affiliated to Lactobacillus, with a relative abundance of 89.77%; the bacteria in cluster II were mainly affiliated to Klebsiella, Kosakonia, and Tetragenococcus, with relative abundances of 19.81%, 12.24%, and 10.89%, respectively. The two clusters were found to be highly significantly different (P<0.001) from one another by Mann Whitney test; meanwhile, a significant negative correlation observed between Lactobacillus and other bacterial genera such as Kosakonia and Pseudomonas (P<0.05). There were significant differences in 15 functions among the two clusters, but both of them were highly expressed in the transport and metabolism functions of amino acids and carbohydrates. The results of isolation and identification of lactic acid bacteria showed that L. plantarum, L. brevis, L. curvatus and L. sakei were contained in Zha-chili, and L. plantarum was the dominant Lactobacillus in Zha-chili from the Tianmen region.

Cite this article

XI La , XIANG Fanshu , ZHANG Yan , ZHANG Haibo , GUO Zhuang . Bacterial community structure and lactic acid bacterial taxa in Zha-chili from Tianmen region[J]. Food and Fermentation Industries, 2022 , 48(17) : 122 -128 . DOI: 10.13995/j.cnki.11-1802/ts.028616

References

[1] 李娜, 张苗苗, 舒娜, 等.咸丰和当阳地区鲊广椒细菌群落结构差异性研究[J].中国酿造, 2020, 39(10):48-53.
LI N, ZHANG M M, SHU N, et al.Difference of bacterial community structure of Zhaguangjiao in Xianfeng and Dangyang region[J].China Brewing, 2020, 39(10):48-53.
[2] 尚雪娇, 雷炎, 代凯文, 等.当阳地区鲊广椒品质的评价[J].食品研究与开发, 2018, 39(24):33-38.
SHANG X J, LEI Y, DAI K W, et al.Quality evaluation of Zhaguangjiao samples collected from Dangyang[J].Food Research and Development, 2018, 39(24):33-38.
[3] 王玉荣, 代凯文, 沈馨, 等.鲊广椒真菌多样性及其对滋味品质影响的评价[J].食品科学, 2018, 39(18):173-178.
WANG Y R, DAI K W, SHEN X, et al.Characterization of fungal microflora and its influence on taste quality of Zhaguangjiao, a Chinese traditional fermented chili product[J].Food Science, 2018, 39(18):173-178.
[4] 王玉荣, 沈馨, 董蕴, 等.鲊广椒细菌多样性评价及其对风味的影响[J].食品与机械, 2018, 34(4):25-30.
WANG Y R, SHEN X, DONG Y, et al.Characterization of bacterial microflora and their functions on flavor quality[J].Food & Machinery, 2018, 34(4):25-30.
[5] CAI W C, WANG Y R, HOU Q C, et al.PacBio sequencing combined with metagenomic shotgun sequencing provides insight into the microbial diversity of Zha-chili[J].Food Bioscience, 2021, 40:100884.
[6] 崔梦君, 王玉荣, 葛东颖, 等.遵义地区莽椒细菌多样性及PICRUSt基因功能预测分析[J].食品与发酵工业, 2020, 46(4):106-112.
CUI M J, WANG Y R, GE D Y, et al.Study on bacterial diversity of Mangjiao in Zunyi region and PICRUSt-based predicted metagenomic analysis[J].Food and Fermentation Industries, 2020, 46(4):106-112.
[7] 李娜, 崔梦君, 马佳佳, 等.基于Illumina MiSeq测序和传统可培养方法的洪湖鲊广椒乳酸菌多样性研究[J].食品与发酵工业, 2021, 47(4):110-115;122.
LI N, CUI M J, MA J J, et al.Lactic acid bacterial diversity of Zha-chili in Honghu County based on Illumina Miseq sequencing and traditional culture method[J].Food and Fermentation Industries, 2021, 47(4):110-115;122.
[8] 郭壮, 葛东颖, 尚雪娇, 等.退化和正常窖泥微生物多样性的比较分析[J].食品工业科技, 2018, 39(22):93-98;106.
GUO Z, GE D Y, SHANG X J, et al.Comparative analysis on the diversity of bacterial microflora in degenerated and normal pit mud[J].Science and Technology of Food Industry, 2018, 39(22):93-98;106.
[9] CAPORASO J G, LAUBER C L, WALTERS W A, et al.Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms[J].The ISME Journal, 2012, 6(8):1 621-1 624.
[10] CALLAHAN B J, MCMURDIE P J, HOLMES S P.Exact sequence variants should replace operational taxonomic units in marker-gene data analysis[J].The ISME Journal, 2017, 11(12):2 639-2 643.
[11] HAAS B J, GEVERS D, EARL A M, et al.Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons[J].Genome Research, 2011, 21(3):494-504.
[12] ANUKAM K.Effects of ampicillin on the gut microbiome of an adult male as determined by 16S rRNA V4 metagenomics sequencing and greengenes bioinformatics suite[J].Journal of Advances in Microbiology, 2018, 7(4):1-18.
[13] COLE J R, WANG Q, FISH J A, et al.Ribosomal Database Project:Data and tools for high throughput rRNA analysis[J].Nucleic Acids Research, 2014, 42(Database issue):D633-D642.
[14] AGRAWAL S, KINH C T, SCHWARTZ T, et al.Determining uncertainties in PICRUSt analysis:An easy approach for autotrophic nitrogen removal[J].Biochemical Engineering Journal, 2019, 152:107328.
[15] 向凡舒, 黄怡, 陈小艳, 等.建始地区酸豇豆盐水细菌多样性及乳酸菌分离鉴定[J].中国酿造, 2020, 39(10):61-65.
XIANG F S, HUANG Y, CHEN X Y, et al.Bacterial diversity of fermented cowpea brine collected from Jianshi area and identification of lactic acid bacteria isolates[J].China Brewing, 2020, 39(10):61-65.
[16] 雷炎, 马佳佳, 雷敏, 等.恩施鲊广椒乳酸菌的分离鉴定及其对挥发性风味物质的影响[J].中国酿造, 2019, 38(7):126-130.
LEI Y, MA J J, LEI M, et al.Isolation and identification of lactic acid bacteria from Zhaguangjiao of Enshi and its effect on volatile flavor substances[J].China Brewing, 2019, 38(7):126-130.
[17] ARUMUGAM M, RAES J, PELLETIER E, et al.Enterotypes of the human gut microbiome[J].Nature, 2011, 473(7346):174-180.
[18] ZHANG J C, GUO Z, XUE Z S, et al.A Phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities[J].The ISME Journal, 2015, 9(9):1 979-1 990.
[19] CHOBY J E, HOWARD-ANDERSON J, WEISS D S.Hypervirulent Klebsiella pneumoniae:Clinical and molecular perspectives[J].Journal of Internal Medicine, 2020, 287(3):283-300.
[20] VALENTINI M, GONZALEZ D, MAVRIDOU D A, et al.Lifestyle transitions and adaptive pathogenesis of Pseudomonas aeruginosa[J].Current Opinion in Microbiology, 2018, 41:15-20.
[21] TIMILSINA S, POTNIS N, NEWBERRY E A, et al.Xanthomonas diversity, virulence and plant-pathogen interactions[J].Nature Reviews Microbiology, 2020, 18(8):415-427.
[22] 王玉荣, 孙永坤, 代凯文, 等.基于单分子实时测序技术的3个当阳广椒样品细菌多样性研究[J].食品工业科技, 2018, 39(2):108-112;118.
WANG Y R, SUN Y K, DAI K W, et al.Study on the diversity of bacteria microflora in 3 Zhaguangjiao samples of Dangyang area by single molecule real-time sequencing technique[J].Science and Technology of Food Industry, 2018, 39(2):108-112;118.
[23] MAO Y, ZHANG X J, XU Z H.Identification of antibacterial substances of Lactobacillus plantarum DY-6 for bacteriostatic action[J].Food Science & Nutrition, 2020, 8(6):2 854-2 863.
[24] 杨爽, 肖瑜.蛹虫草固态发酵对玉米粉加工性质及消化性的影响[J].食品工业科技, 2021, 42(11):122-127.
YANG S, XIAO Y.Effect of solid-state fermentation with Cordyceps militaris on processing and digestive properties of corn flour[J].Science and Technology of Food Industry, 2021, 42(11):122-127.
[25] 张大力, 冯艳鹤, 刘炳利, 等.自然发酵糯玉米中细菌多样性分析及纯菌种对其加工特性的影响[J].食品科学, 2018, 39(18):109-114.
ZHANG D L, FENG Y H, LIU B L, et al.Analysis of bacterial diversity in naturally fermented waxy corn and effects of pure fermentation on its processing characteristics[J].Food Science, 2018, 39(18):109-114.
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