Systematic metabolic engineering of Escherichia coli for high-yield L-tryptophan production

  • WU Yadong ,
  • YANG Yan ,
  • WANG Jing ,
  • ZHANG Weifeng ,
  • WANG Xiaonan ,
  • CHEN Ning
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  • 1(College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, China)
    2(Ruzhou Kunhe Biotechnology Co.Ltd., Ruzhou 467500, China)

Received date: 2025-10-17

  Revised date: 2025-12-17

  Online published: 2026-08-21

Abstract

L-Tryptophan (L-Trp) is one of the essential amino acids for humans and animals, widely used in food additives, animal feed, and pharmaceutical applications.Due to its advantages of high efficiency and low cost, microbial fermentation has become the mainstream method for L-tryptophan production.Developing genetically stable, high-yield strains is crucial for industrial-scale production.In this study, starting with Escherichia coli W3110 as the parent strain, a systematic metabolic engineering strategy was employed.This involved knocking out the L-tryptophan operon repressor gene (trpR) to relieve regulatory constraints, introducing feedback-resistant variants AroGfbr and TrpEfbr to enhance the flux of the L-tryptophan biosynthetic pathway, optimizing central metabolic pathways to increase the supply of precursors such as phosphoenolpyruvate (PEP) and erythrose-4-phosphate (E4P), and refining the L-tryptophan transport and cofactor supply systems.As a result, a high-yield strain SW-21 was constructed, which required no inducer, was plasmid-free, and exhibited genetic stability.The engineered strain SW-21, after 45 h of fed-batch fermentation in a 50 L fermenter, achieved an L-tryptophan titer of 57.2 g/L with a yield of 21.5%.This study integrated multiple metabolic engineering strategies to develop a strain suitable for industrial L-tryptophan production and provided a reference for constructing high-yield strains of other aromatic compounds.

Cite this article

WU Yadong , YANG Yan , WANG Jing , ZHANG Weifeng , WANG Xiaonan , CHEN Ning . Systematic metabolic engineering of Escherichia coli for high-yield L-tryptophan production[J]. Food and Fermentation Industries, 2026 , 52(14) : 48 -56 . DOI: 10.13995/j.cnki.11-1802/ts.044858

References

[1] SAHA A, MAHALI K, MUKHERJEE P, et al.Solubility and dissolution thermodynamics of L-histidine and L-tryptophan in aqueous ethanol solution at five equidistant temperatures[J].Journal of Molecular Liquids, 2023, 389:122852.
[2] ILIEV P, IVANOV S, LAZAROV S, et al.Physiological and pathophysiological effects of L-tryptophan's metabolites on the brain and immunity-a challenge for drug development[J].Pharmacia, 2025, 72:1-7.
[3] FERNSTROM J D.Effects and side effects associated with the non-nutritional use of tryptophan by humans 1-3[J].The Journal of Nutrition, 2012, 142(12):2236S-2244S.
[4] EFSA Panel on Additives and Products or Substances used in Animal Feed, VILLA R E, AZIMONTI G, et al.Safety and efficacy of a feed additive consisting of L-tryptophan produced with Corynebacterium glutamicum KCCM 80346 for all animal species (CJ Europe GmbH)[J].EFSA Journal, 2025, 23(4):e9327.
[5] XU B C, LI Z, WANG C, et al.Effects of fermented feed supplementation on pig growth performance:A meta-analysis[J].Animal Feed Science and Technology, 2020, 259:114315.
[6] 杨鑫硕, 常丹翼, 续丹丹, 等.色氨酸及其细菌代谢产物对畜禽肠道屏障及生产性能影响的研究进展[J].中国畜牧兽医, 2025, 52(2):636-644.
YANG X S, CHANG D Y, XU D D, et al.Advances in the impact of tryptophan and its bacterial metabolites on intestinal barrier function and growth performance in livestock and poultry[J].China Animal Husbandry & Veterinary Medicine, 2025, 52(2):636-644.
[7] 阮栋. 饲粮添加缬氨酸、异亮氨酸和色氨酸能解决玉米发酵蛋白中亮氨酸过量对断奶仔猪造成的负面影响[J].广东饲料, 2024, 33(12):43.
RUAN D.Adding valine, isoleucine and tryptophan to the diet can solve the negative effects of excessive leucine in corn fermented protein on weaned piglets[J].Guangdong Feed, 2024, 33(12):43.
[8] 沈冠同, 刘亚琦, 吉南希, 等.生物发酵法生产L-色氨酸的研究进展[J].生物工程学报, 2024, 40(3):621-643.
SHEN G T, LIU Y Q, JI N X, et al.Advances in fermentative production of L-tryptophan:A review[J].Chinese Journal of Biotechnology, 2024, 40(3):621-643.
[9] 梁昌志, 王华美, 褚沛宇, 等.外源色氨酸对低氮水平下大豆苗期生长及生理的调控效应[J].江苏农业科学, 2025, 53(1):94-102.
LIANG C Z, WANG H M, CHU P Y, et al.Regulation effect of exogenous tryptophan on growth and physiology of soybean seedlings under low nitrogen levels[J].Jiangsu Agricultural Sciences, 2025, 53(1):94-102.
[10] 郭晓霄, 王小华.低氮胁迫下外源色氨酸对小叶杨生长和氮代谢酶活性的影响[J].贵州林业科技, 2024, 52(3):20-25.
GUO X X, WANG X H.Effects of tryptophan on growth and nitrogen metabolism physiology of Populus simonii under low nitrogen stress[J].Guizhou Forestry Science and Technology, 2024, 52(3):20-25.
[11] JIANG J, WANG Z, KONG X Z, et al.Exogenous tryptophan application improves cadmium tolerance and inhibits cadmium upward transport in broccoli (Brassica oleracea var.italica)[J].Frontiers in Plant Science, 2022, 13:969675.
[12] LI Y, SUN J Z, FU Z H, et al.Engineering the L-tryptophan metabolism for efficient de novo biosynthesis of tryptophol in Saccharomyces cerevisiae[J].Biotechnology for Biofuels and Bioproducts, 2024, 17(1):130.
[13] OGINO T, GARNER C, MARKLEY J L, et al.Biosynthesis of aromatic compounds:13C NMR spectroscopy of whole Escherichia coli cells[J].Proceedings of the National Academy of Sciences of the United States of America, 1982, 79(19):5828-5832.
[14] ZHAO Z J, ZOU C, ZHU Y X, et al.Development of L-tryptophan production strains by defined genetic modification in Escherichia coli[J].Journal of Industrial Microbiology & Biotechnology, 2011, 38(12):1921-1929.
[15] WANG X G, QIU C, CHEN C H, et al.Metabolic engineering of Escherichia coli for high-level production of L-phenylalanine[J].Journal of Agricultural and Food Chemistry, 2024, 72(19):11029-11040.
[16] DODGE T C, GERSTNER J M.Optimization of the glucose feed rate profile for the production of tryptophan from recombinant E.coli[J].Journal of Chemical Technology & Biotechnology, 2002, 77(11):1238-1245.
[17] CHAN E C, TSAI H L, CHEN S L, et al.Amplification of the tryptophan operon gene in Escherichia coli chromosome to increase L-tryptophan biosynthesis[J].Applied Microbiology and Biotechnology, 1993, 40(2):301-305.
[18] AZUMA S, TSUNEKAWA H, OKABE M, et al.Hyper-production of l-trytophan via fermentation with crystallization[J].Applied Microbiology and Biotechnology, 1993, 39(4):471-476.
[19] 叶慧敏, 杜军, 唐玉景, 等.基于常压室温等离子体诱变和高通量筛选选育L-色氨酸高产菌株[J].生物工程学报, 2024, 40(9):3201-3215.
YE H M, DU J, TANG Y J, et al.Breeding of L-tryptophan high-yield strain by ARTP mutagenesis and high-throughput screening[J].Chinese Journal of Biotechnology, 2024, 40(9):3201-3215.
[20] GUO L, DING S, LIU Y D, et al.Enhancing tryptophan production by balancing precursors in Escherichia coli[J].Biotechnology and Bioengineering, 2022, 119(3):983-993.
[21] XIONG B, ZHU Y D, TIAN D G, et al.Flux redistribution of central carbon metabolism for efficient production of L-tryptophan in Escherichia coli[J].Biotechnology and Bioengineering, 2021, 118(3):1393-1404.
[22] LI Q, SUN B B, CHEN J, et al.A modified pCas/pTargetF system for CRISPR-Cas9-assisted genome editing in Escherichia coli[J].Acta Biochimica et Biophysica Sinica, 2021, 53(5):620-627.
[23] 程立坤, 徐庆阳, 谢希贤, 等.HPLC快速测定发酵液中L-色氨酸[J].天津科技大学学报, 2010, 25(1):9-12.
CHENG L K, XU Q Y, XIE X X, et al.Quick determination of L-tryptophan in fermented broth by HPLC[J].Journal of Tianjin University of Science & Technology, 2010, 25(1):9-12.
[24] 刘倩钰, 吴丽雯, 牛建军, 等.细菌磷酸转移酶系统(PTS)的组成与功能研究进展[J].微生物学通报, 2020, 47(7):2266-2277.
LIU Q Y, WU L W, NIU J J, et al.Research progress of the composition and function of bacterial phosphotransferase system[J].Microbiology China, 2020, 47(7):2266-2277.
[25] PENG W X, ZHANG X, QI Q S, et al.Advances in adaptive laboratory evolution applications for Escherichia coli[J].Synthetic and Systems Biotechnology, 2025, 10(4):1306-1321.
[26] DING D Q, BAI D Y, LI J L, et al.Analyzing the genetic characteristics of a tryptophan-overproducing Escherichia coli[J].Bioprocess and Biosystems Engineering, 2021, 44(8):1685-1697.
[27] VASUDEVAN R, GALE G A R, SCHIAVON A A, et al.CyanoGate:A modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax[J].Plant Physiology, 2019, 180(1):39-55.
[28] GU P F, YANG F, LI F F, et al.Knocking out analysis of tryptophan permeases in Escherichia coli for improving L-tryptophan production[J].Applied Microbiology and Biotechnology, 2013, 97(15):6677-6683.
[29] LIU Q, CHENG Y S, XIE X X, et al.Modification of tryptophan transport system and its impact on production of L-tryptophan in Escherichia coli[J].Bioresource Technology, 2012, 114:549-554.
[30] LIU L N, DUAN X G, WU J.L-tryptophan production in Escherichia coli improved by weakening the pta-AckA pathway[J].PLoS One, 2016, 11(6):e0158200.
[31] MARTÍNEZ I, ZHU J F, LIN H, et al.Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways[J].Metabolic Engineering, 2008, 10(6):352-359.
[32] LI Z D, WANG X H, HU G P, et al.Engineering metabolic flux for the microbial synthesis of aromatic compounds[J].Metabolic Engineering, 2025, 88:94-112.
[33] DONG Y F, CHEN Z.Systems metabolic engineering of Corynebacterium glutamicum for efficient L-tryptophan production[J].Synthetic and Systems Biotechnology, 2025, 10(2):511-522.
[34] 熊博. 大肠杆菌L-色氨酸工程菌株的代谢优化[D].天津:天津科技大学, 2021.
XIONG B.Metabolic optimization of engineered Escherichia coli for L-tryptophan production[D].Tianjin:Tianjin University of Science and Technology,2021.
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