Directed evolution-based molecular modification of D-allulose 3-epimerase

  • SUN Mingjing ,
  • LIU Zhanzhi ,
  • LIU Shuhan ,
  • WANG Liuxin ,
  • WANG Sheng ,
  • WU Jing
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  • 1(School of Biotechnology, Jiangnan University, Wuxi 214122, China)
    2(State Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi 214122, China)

Received date: 2024-12-30

  Revised date: 2025-05-08

  Online published: 2026-01-22

Abstract

As the quality of life improves, people’s demand for health is also increasing, and sugar substitutes are gradually coming into people’s view.D-allulose is a low-calorie, high sweetness, scarce sugar that is an ideal substitute for sucrose.The instrumental enzyme for industrial preparation of D-allulose is mainly D-allulose 3-epimerase (DAE), however, to meet the demands of industrial production, the specific activity of DAE still needs to be further increased.In this study, by applying a D-allulose-specific biosensor composed of the transcription factor psiR, combining with fluorescence-activated cell sorting (FACS) fluorescence analysis sorting and 96-well microtiter plate screening, we finally obtained the Clostridium cellulolyticum H10 DAE (CcDAE) mutant F147L with a 26.21% increase in specific activity, with an optimal temperature of 60 ℃ and an optimal pH of 7.5.This study not only successfully demonstrated that transcription factor-based biosensors have considerable application value in the directed evolution of proteases, but also provided new ideas for the modification of DAE enzymes.

Cite this article

SUN Mingjing , LIU Zhanzhi , LIU Shuhan , WANG Liuxin , WANG Sheng , WU Jing . Directed evolution-based molecular modification of D-allulose 3-epimerase[J]. Food and Fermentation Industries, 2026 , 52(1) : 25 -30 . DOI: 10.13995/j.cnki.11-1802/ts.042005

References

[1] CHEN D, CHEN J J, LIU X Y, et al.Biochemical identification of a hyperthermostable L-ribulose 3-epimerase from Labedella endophytica and its application for D-allulose bioconversion[J].International Journal of Biological Macromolecules, 2021, 189:214-222.
[2] KIMURA T, KANASAKI A, HAYASHI N, et al.D-Allulose enhances postprandial fat oxidation in healthy humans[J].Nutrition, 2017, 43-44:16-20.
[3] OCHIAI M, ONISHI K, YAMADA T, et al.D-Psicose increases energy expenditure and decreases body fat accumulation in rats fed a high-sucrose diet[J].International Journal of Food Sciences and Nutrition, 2014, 65(2):245-250.
[4] NAGATA Y, KANASAKI A, TAMARU S, et al.D-Psicose, an epimer of D-fructose, favorably alters lipid metabolism in Sprague-Dawley rats[J].Journal of Agricultural and Food Chemistry, 2015, 63(12):3168-3176.
[5] SUNA S, YAMAGUCHI F, KIMURA S, et al.Preventive effect of D-psicose, one of rare ketohexoses, on di-(2-ethylhexyl) phthalate (DEHP)-induced testicular injury in rat[J].Toxicology Letters, 2007, 173(2):107-117.
[6] KIM S E, KIM S J, KIM H J, et al.D-Psicose, a sugar substitute, suppresses body fat deposition by altering networks of inflammatory response and lipid metabolism in C57BL/6J-ob/ob mice[J].Journal of Functional Foods, 2017, 28:265-274.
[7] IZUMORI K, KHAN A R, OKAYA H, et al.A new enzyme, D-ketohexose 3-epimerase, from Pseudomonas sp.ST-24[J].Bioscience, Biotechnology, and Biochemistry, 1993, 57(6):1037-1039.
[8] KIM H J, HYUN E K, KIM Y S, et al.Characterization of an Agrobacterium tumefaciens D-psicose 3-epimerase that converts D-fructose to D-psicose[J].Applied and Environmental Microbiology, 2006, 72(2):981-985.
[9] ZHANG W, WEI M J, SUN X X, et al.Fine-tuning of carbon flux and artificial promoters in Bacillus subtilis enables high-level biosynthesis of D-allulose[J].Journal of Agricultural and Food Chemistry, 2022, 70(43):13935-13944.
[10] HENDEL S J, SHOULDERS M D.Directed evolution in mammalian cells[J].Nature Methods, 2021, 18(4):346-357.
[11] MAHR R, VON BOESELAGER R F, WIECHERT J, et al.Screening of an Escherichia coli promoter library for a phenylalanine biosensor[J].Applied Microbiology and Biotechnology, 2016, 100(15):6739-6753.
[12] ROGERS J K, TAYLOR N D, CHURCH G M.Biosensor-based engineering of biosynthetic pathways[J].Current Opinion in Biotechnology, 2016, 42:84-91.
[13] DELLA CORTE D, VAN BEEK H L, SYBERG F, et al.Engineering and application of a biosensor with focused ligand specificity[J].Nature Communications, 2020, 11:4851.
[14] XU M J, LIU P P, CHEN J M, et al.Development of a novel biosensor-driven mutation and selection system via in situ growth of Corynebacterium crenatum for the production of L-arginine[J].Frontiers in Bioengineering and Biotechnology, 2020, 8:175.
[15] ARMETTA J, BERTHOME R, CROS A, et al.Biosensor-based enzyme engineering approach applied to psicose biosynthesis[J].Synthetic Biology, 2019, 4(1):ysz028.
[16] LI C, GAO X, QI H B, et al.Substantial improvement of an epimerase for the synthesis of D-allulose by biosensor-based high-throughput microdroplet screening[J].Angewandte Chemie International Edition, 2023, 62(10):e202216721.
[17] LIU Z Z, CHEN S, WU J.Advances in ultrahigh-throughput screening technologies for protein evolution[J].Trends in Biotechnology, 2023, 41(9):1168-1181.
[18] BRYKSIN A V, MATSUMURA I.Overlap extension PCR cloning:A simple and reliable way to create recombinant plasmids[J].BioTechniques, 2010, 48(6):463-465.
[19] WILSON D S, KEEFE A D.Random mutagenesis by PCR[J].Current Protocols in Molecular Biology, 2001, Chapter 8:Unit 8.3.
[20] BOSSHART A, HEE C S, BECHTOLD M, et al.Directed divergent evolution of a thermostable D-tagatose epimerase towards improved activity for two hexose substrates[J].ChemBioChem, 2015, 16(4):592-601.
[21] LIU Z M, FU X D, YUAN M X, et al.Surface charged amino acid-based strategy for rational engineering of kinetic stability and specific activity of enzymes:Linking experiments with computational modeling[J].International Journal of Biological Macromolecules, 2021, 182:228-236.
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