分析与检测

多重实时荧光串联PCR技术高通量检测生蚝中9种致病菌

  • 麻春阳 ,
  • 高世珏 ,
  • 蒋丽婷 ,
  • 杨础华 ,
  • TANUSHREE B GUPTA ,
  • NIMA AZARAKHSH ,
  • 吴希阳
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  • 1(暨南大学 食品科学与工程系,广东 广州,510632)
    2(广州市微生物研究所有限公司,广东 广州,510663)
    3(梅西大学Hopkirk研究所,新西兰 北帕默斯顿,4474)
硕士研究生(吴希阳教授为通信作者,E-mail:tkentwu@jnu.edu.cn)

收稿日期: 2022-03-03

  修回日期: 2022-04-06

  网络出版日期: 2022-12-02

基金资助

2019广州市民生科技攻关计划项目(201903010007);2018广东省重点领域研发计划项目(2019B020212004);2021年广东省国际科技合作基地:中国-新西兰食品安全与营养保障国际联合研究中心项目(2021A0505020016)

A multiplexed tandem PCR assay for simultaneous detection of nine different pathogens in oyster

  • MA Chunyang ,
  • GAO Shijue ,
  • JIANG Liting ,
  • YANG Chuhua ,
  • TANUSHREE B GUPTA ,
  • NIMA AZARAKHSH ,
  • WU Xiyang
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  • 1(Department of Food Science and Engineering, Jinan University, Guangzhou 510632, China)
    2(Guangzhou Institute of Microbiology Co. Ltd., Guangzhou 510663, China)
    3(Hopkirk Research Institute, Massey University, Palmerston North 4474, New Zealand)

Received date: 2022-03-03

  Revised date: 2022-04-06

  Online published: 2022-12-02

摘要

大肠埃希氏菌、金黄色葡萄球菌、沙门氏菌、溶藻弧菌、副溶血弧菌、铜绿假单胞菌、产气荚膜梭菌、单增李斯特菌和创伤弧菌是贝类食品中常见的食源性致病菌。该文通过设计特异性引物,优化反应参数以建立多重实时荧光串联PCR(multiplexed tandem PCR,MT-PCR)方法,进一步评估方法的特异性和灵敏度,并用于检测生蚝样品。优化后的MT-PCR方法与常规qPCR具有相同定量能力,可同时检测上述9种致病菌。在对混合菌液的检测中,MT-PCR方法的检测灵敏度最低可达102 CFU/mL,且此法对其中6种致病菌的检测灵敏度高于qPCR。应用该技术检测人工染菌的生蚝样品,检测灵敏度为102~103CFU/g。该研究建立的MT-PCR方法可实现高通量、快速准确地检测生蚝中这9种常见的食源性致病菌,对保障食品安全和评估食源性致病菌污染风险具有重要意义。

本文引用格式

麻春阳 , 高世珏 , 蒋丽婷 , 杨础华 , TANUSHREE B GUPTA , NIMA AZARAKHSH , 吴希阳 . 多重实时荧光串联PCR技术高通量检测生蚝中9种致病菌[J]. 食品与发酵工业, 2022 , 48(21) : 247 -253 . DOI: 10.13995/j.cnki.11-1802/ts.031373

Abstract

Escherichia coli, Staphylococcus aureus, Salmonella, Vibrio alginolyticus, Vibrio parahaemolyticus, Pseudomonas aeruginosa, Clostridium perfringens, Listeria monocytogenes and Vibrio vulnificus are common foodborne pathogens in shellfish such as oyster. To provide technical support for rapid screening of foodborne pathogens, a multiplexed tandem polymerase chain reaction (MT-PCR) assay was developed. By designing specific primers and optimizing reaction parameters, the specificity and sensitivity of MT-PCR was further evaluated and applied in oyster samples. The optimized MT-PCR has equal quantitative ability as qPCR and can simultaneously detect nine pathogenic bacteria. The sensitivity of MT-PCR for detecting nine pathogens was less to 102 CFU/mL in mixed culture, especially, the sensitivity of MT-PCR was 10 times higher than qPCR for detecting E. coli, S. aureus, P. aeruginosa, C. perfringens, L. monocytogenes and V. vulnificus. The MT-PCR can detect nine target strains at 102-103 CFU/g in spiked oyster samples. The MT-PCR assay could achieve high-throughput, rapid and accurate detection of these nine pathogens in oyster samples, which is of great significance to ensure food safety and evaluate the risk of foodborne pathogens contamination.

参考文献

[1] MA B, LI J L, CHEN K, et al.Multiplex recombinase polymerase amplification assay for the simultaneous detection of three foodborne pathogens in seafood[J].Foods (Basel, Switzerland), 2020, 9(3):278.
[2] DUMEN E, EKICI G, ERGIN S, et al.Presence of foodborne pathogens in seafood and risk ranking for pathogens[J].Foodborne Pathogens and Disease, 2020, 17(9):541-546.
[3] LEHEL J, YAUCAT-GUENDI R, DARNAY L, et al.Possible food safety hazards of ready-to-eat raw fish containing product (sushi, sashimi)[J].Critical Reviews in Food Science and Nutrition, 2021, 61(5):867-888.
[4] 陈嘉茵, 方苓, 吴诗微, 等.一步法微滴数字PCR检测生菜中GII型诺如病毒[J].食品科学, 2019, 40(4):332-337.
CHEN J Y, FANG L, WU S W, et al.Detection of Norovirus genogroup II in lettuce by droplet digital PCR[J].Food Science, 2019, 40(4):332-337.
[5] 赵峰, 佟利惠, 杨敏, 等.牡蛎中诺如病毒的感染及其防控研究进展[J].南方水产科学, 2021, 17(4):133-140.
ZHAO F, TONG L H, YANG M, et al.Progress and prospects of infection, prevention and control of Norovirus in oyster[J].South China Fisheries Science, 2021, 17(4):133-140.
[6] FODDAI A C G, GRANT I R.Methods for detection of viable foodborne pathogens:Current state-of-art and future prospects[J].Applied Microbiology and Biotechnology, 2020, 104(10):4 281-4 288.
[7] MAILLET A, BOUJU-ALBERT A, ROBLIN S, et al.Impact of DNA extraction and sampling methods on bacterial communities monitored by 16S rDNA metabarcoding in cold-smoked salmon and processing plant surfaces[J].Food Microbiology, 2021, 95:103705.
[8] WEI C J, ZHONG J L, HU T, et al.Simultaneous detection of Escherichia coli O157:H7, Staphylococcus aureus and Salmonella by multiplex PCR in milk[J].3 Biotech, 2018, 8(1):1-7.
[9] ATTWOOD L O, FRANCIS M J, HAMBLIN J, et al.Clinical evaluation of AusDiagnostics SARS-CoV-2 multiplex tandem PCR assay[J].Journal of Clinical Virology, 2020, 128:104448.
[10] LAU A, STANLEY K, SORRELL T.Multiplex-tandem PCR for fungal diagnostics[J].Methods in Molecular Biology (Clifton, N.J.), 2013, 968:195-201.
[11] WEI S, WANG C G, ZHU P Y, et al.A high-throughput multiplex tandem PCR assay for the screening of genetically modified maize[J].LWT, 2018, 87:169-176.
[12] 魏霜, 汪天杰, 龙阳, 等.多重富集定量PCR(ME-qPCR)同时检测4种食源性病原弧菌[J].中国农业科学, 2016, 49(23):4 619-4 627.
WEI S, WANG T J, LONG Y, et al.Multiplex enrichment quantitative PCR assays for the detection of Vibrio alginolyticus, Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae[J].Scientia Agricultura Sinica, 2016, 49(23):4 619-4 627.
[13] XIE G Y, YU S, LI W, et al.Simultaneous detection of Salmonella spp., Pseudomonas aeruginosa, Bacillus cereus, and Escherichia coli O157:H7 in environmental water using PMA combined with mPCR[J].Journal of Microbiology (Seoul, Korea), 2020, 58(8):668-674.
[14] NAGPAL R, OGATA K, TSUJI H, et al.Sensitive quantification of Clostridium perfringens in human feces by quantitative real-time PCR targeting alpha-toxin and enterotoxin genes[J].BMC Microbiology, 2015, 15:219.
[15] GRACIAS K S, MCKILLIP J L.A review of conventional detection and enumeration methods for pathogenic bacteria in food[J].Canadian Journal of Microbiology, 2004, 50(11):883-890.
[16] COSTA J, MAFRA I, KUCHTA T, et al.Single-tube nested real-time PCR as a new highly sensitive approach to trace hazelnut[J].Journal of Agricultural and Food Chemistry, 2012, 60(33):8 103-8 110.
[17] TAO J, LIU W W, DING W, et al.A multiplex PCR assay with a common primer for the detection of eleven foodborne pathogens[J].Journal of Food Science, 2020, 85(3):744-754.
[18] D’SOUZA C, KUMAR B K, RAI P, et al.Application of gyrB targeted SYBR green based qPCR assay for the specific and rapid detection of Vibrio vulnificus in seafood[J].Journal of Microbiological Methods, 2019, 166:105747.
[19] ZHANG Z H, XIAO L L, LOU Y, et al.Development of a multiplex real-time PCR method for simultaneous detection of Vibrio parahaemolyticus, Listeria monocytogenes and Salmonella spp.in raw shrimp[J].Food Control, 2015, 51:31-36.
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