Please wait a minute...
 
 
食品与发酵工业  2020, Vol. 46 Issue (4): 106-112    DOI: 10.13995/j.cnki.11-1802/ts.022749
  研究报告 本期目录 | 过刊浏览 | 高级检索 |
遵义地区莽椒细菌多样性及PICRUSt基因功能预测分析
崔梦君, 王玉荣, 葛东颖, 张振东, 刘欣, 郭壮*
(湖北文理学院 食品科学技术学院,鄂西北传统发酵食品研究所,湖北 襄阳,441053)
Study on bacterial diversity of Mangjiao in Zunyi region and PICRUSt-based predicted metagenomic analysis
CUI Mengjun, WANG Yurong, GE Dongying, ZHANG Zhendong, LIU Xin, GUO Zhuang*
(Northwest Hubei Research Institute of Traditional Fermented Food, College of Food Science and Technology, Hubei University of Arts and Science, Xiangyang 441053, China)
下载:  HTML   PDF (2129KB) 
输出:  BibTeX | EndNote (RIS)      
摘要 该研究采用传统培养和Illumina MiSeq高通量测序技术相结合的方法对莽椒样品中的细菌多样性进行了解析。结果表明,17 株分离菌全部为乳酸菌,且16 株为乳杆菌。在门水平上,Firmicutes(硬壁菌门)和Proteobacteria(变形菌门)为绝对优势菌门,累计占比为99.39%;在属水平上,优势菌属为Lactobacillus(乳杆菌属,41.37%)、Pseudomonas(假单胞菌属,16.64%)、Weissella(魏斯氏菌属,14.96%)、Enterobacter(肠杆菌属,5.04%)、Pediococcus(片球菌属,2.48%)、Klebsiella(克雷伯氏菌属,2.40%)和Bacillus(芽孢杆菌属,1.33%)。从MG-RAST数据中下载湖北省当阳地区鲊广椒测序数据,进一步对莽椒和鲊广椒细菌多样性进行了分析。基因功能和表型结果表明,莽椒中细菌在生长繁殖等方面显著较低,而在革兰氏阴性菌和致病潜力的相对强度上显著较高。相关性检验发现优势细菌属对碳水化合物代谢、核酸代谢和蛋白质代谢等具有显著影响。由此可知该本研究对后续乳酸菌遗传多样性研究和产业化推动具有积极的意义。
服务
把本文推荐给朋友
加入引用管理器
E-mail Alert
RSS
作者相关文章
崔梦君
王玉荣
葛东颖
张振东
刘欣
郭壮
关键词:  莽椒  细菌多样性  功能预测  表型预测  高通量测序    
Abstract: In this study, the traditional culture method coupled with and Illumina MiSeq high-throughput sequencing technology were used to analyze the bacterial diversity in Mangjiao samples. The results showed that all the 17 isolated strains were lactic acid bacteria and 16 of which were characterized as Lactobacillus. At phylum level, Firmicutes and Proteobacteria were the dominant bacteria accounting for 99.39%. At genus level, the dominant bacteria were Lactobacillus (41.37%), Pseudomonas (16.64%), Weissella (14.96%), Enterobacter (5.04%), Pediococcus (2.48%), Klebsiella (2.40%) and Bacillus (1.33%). The sequencing data of Zhaguangjiao in Dangyang area Hubei province were downloaded from MG-RAST data, then the bacterial diversity of Mangjiao and Zhaguangjiao were compared and analyzed. The results of gene function and phenotype showed that the growth and reproduction of bacteria in Mangjiao was significantly lower, but the relative intensity of Gram-negative bacteria and pathogenic potential was significantly higher than Zhaguangjiao. The correlation test showed that the dominant bacteria in Mangjiao had significant effects on carbohydrate metabolism, nucleic acid metabolism and protein metabolism. This study played positive effect on the research of the genetic diversity and industrialization of lactic acid bacteria.
Key words:  Mangjiao    bacterial diversity    functional prediction    phenotypic prediction    high throughput sequencing
收稿日期:  2019-11-08                出版日期:  2020-02-25      发布日期:  2020-04-07      期的出版日期:  2020-02-25
基金资助: 湖北文理学院教师科研能力培育基金项目(2017kypy051)
作者简介:  本科生(郭壮副教授为通讯作者,E-mail:guozhuang1984@163.com)
引用本文:    
崔梦君,王玉荣,葛东颖,等. 遵义地区莽椒细菌多样性及PICRUSt基因功能预测分析[J]. 食品与发酵工业, 2020, 46(4): 106-112.
CUI Mengjun,WANG Yurong,GE Dongying,et al. Study on bacterial diversity of Mangjiao in Zunyi region and PICRUSt-based predicted metagenomic analysis[J]. Food and Fermentation Industries, 2020, 46(4): 106-112.
链接本文:  
http://sf1970.cnif.cn/CN/10.13995/j.cnki.11-1802/ts.022749  或          http://sf1970.cnif.cn/CN/Y2020/V46/I4/106
[1] 王玉荣, 代凯文, 沈馨, 等. 鲊广椒真菌多样性及其对滋味品质影响的评价[J]. 食品科学, 2018, 39(18): 173-178.
[2] 黄郑朝, 宋莲军, 黄现青, 等. 基于高通量测序对中国不同区域传统发酵香肠细菌多样性的研究[J]. 食品与发酵工业, 2019, 45(18): 15-21.
[3] 高庆超, 常应九, 马蓉, 等. 黑果枸杞酵素自然发酵过程中微生物群落的动态变化[J]. 食品与发酵工业, 2019, 45(13): 126-133.
[4] SCHIRMER M, IJAZ U Z, D'AMORE R, et al. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform[J]. Nucleic Acids Research, 2015, 43(6): e37-e37.
[5] QUAIL M A, SMITH M, COUPLAND P, et al. A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers[J]. BMC Genomics, 2012, 13(1): 341.
[6] 王玉荣, 沈馨, 董蕴, 等. 鲊广椒细菌多样性评价及其对风味的影响[J]. 食品与机械, 2018, 34(4): 25-30.
[7] 雷炎, 马佳佳, 雷敏, 等. 恩施鲊广椒乳酸菌的分离鉴定及其对挥发性风味物质的影响[J]. 中国酿造, 2019, 38(7): 126-130.
[8] 向凡舒, 王玉荣, 葛东颖, 等. 湖北夷陵地区鲊广椒中乳酸菌的分离鉴定及其对产品品质的影响[J]. 食品科技, 2019, 44(4): 23-29.
[9] 王玉荣, 杨成聪, 葛东颖, 等. 扩增区域对鲊广椒细菌MiSeq测序的影响[J]. 食品科学, 2019, 40(10): 134-140.
[10] 向凡舒, 折米娜, 何萌, 等. 基于DGGE和Illumina MiSeq技术解析恩施地区米酒细菌多样性[J]. 食品与发酵工业, 2019, 45(14): 41-46;62.
[11] CAPORASO J G, KUCZYNSKI J, STOMBAUGH J, et al. QIIME allows analysis of high-throughput community sequencing data[J]. Nature Methods, 2010, 7(5): 335-336.
[12] ZHANG Y, ALEKSEYENKO A V. Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene[J]. PloS One, 2017, 12(11): e0 187 940.
[13] VU D, GEORGIEVSKA S, SZOKE S, et al. fMLC: Fast multi-level clustering and visualization of large molecular datasets[J]. Bioinformatics, 2017, 34(9): 1 577-1 579.
[14] MAJANEVA M, HYYTIÃINEN K, VARVIO S L, et al. Bioinformatic amplicon read processing strategies strongly affect eukaryotic diversity and the taxonomic composition of communities[J]. PLoS One, 2015, 10(6): e0 130 035.
[15] BALVOČIU-TÉ M, HUSON D H, SILVA R D P,et al. Greengenes, NCBI and OTT—How do these taxonomies compare?[J]. BMC Genomics, 2017, 18(2): 114.
[16] BUI H Q, LA C N H, DO M N. A fast tree-based algorithm for compressed sensing with sparse-tree prior[J]. Signal Processing, 2015, 108: 628-641.
[17] WILKINSON T J, HUWS S A, EDWARDS J E, et al. CowPI: A rumen microbiome focussed version of the PICRUSt functional inference software[J]. Frontiers in Microbiology, 2018, 9(5): 1 095.
[18] HUERTA-CEPAS J, SZKLARCZYK D, HELLER D, et al. eggNOG 5.0: A hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses[J]. Nucleic Acids Research, 2018, 47(D1): 309-314.
[19] WARD T, LARSON J, MEULEMANS J, et al. BugBase predicts organism level microbiome phenotypes[J]. BioRxiv, 2017: 133462.
[20] HOSEINIFAR S H, RING? E, SHENAVAR MASOULEH A, et al. Probiotic, prebiotic and synbiotic supplements in sturgeon aquaculture: A review[J]. Reviews in Aquaculture, 2016, 8(1): 89-102.
[21] 李娜, 王玉荣, 葛东颖, 等. 当阳地区鲊广椒中乳酸菌的分离鉴定及其应用[J]. 中国酿造, 2019, 38(2): 37-41.
[22] 杨吉霞, 张利玲, 蒋厚阳, 等. 眉山泡菜中乳酸菌的分离鉴定[J]. 食品科学, 2015, 36(17): 158-163.
[23] 敖晓琳, 蒲彪, 蔡义民, 等. 发酵乳杆菌及其益生特性研究进展[J]. 食品与生物技术学报, 2015, 34(2): 121-127.
[24] 王玉荣, 孙永坤, 代凯文, 等. 基于单分子实时测序技术的3个当阳广椒样品细菌多样性研究[J]. 食品工业科技, 2018, 39(2): 108-112;118.
[25] ZHANG Z, HOU Q, WANG Y, et al. Lactobacillus zhachilii sp. nov., a lactic acid bacterium isolated from Zha-Chili[J]. International Journal of Systematic and Evolutionary Microbiology, 2019, 69(8): 2 196-2 201.
[26] FUSCO V, QUERO G M, CHO G S, et al. The genus Weissella: taxonomy, ecology and biotechnological potential[J]. Frontiers in Microbiology, 2015, 6: 155.
[27] 葛东颖, 王玉荣, 向凡舒, 等. 荆州地区鲊广椒乳酸菌多样性解析及其分离株发酵特性的评价[J]. 中国食品添加剂, 2019, 30(4): 72-79.
[28] FU J, LV H, CHEN F. Diversity and variation of bacterial community revealed by MiSeq sequencing in chinese dark teas[J]. PLoS One, 2016, 11(9): e0 162 719.
[29] 宋宇琴. 德氏乳杆菌保加利亚亚种的群体遗传学和功能基因组学研究[D]. 呼和浩特:内蒙古农业大学, 2018.
[1] 邓祥宜, 李继伟, 何立超, 张原源, 黄国威, 鲍晓龙, 邱朝坤. 宣恩火腿发酵过程中表面微生物群落演替规律[J]. 食品与发酵工业, 2021, 47(7): 34-42.
[2] 刘梦琦, 朱媛媛, 倪慧, 王玉荣, 郭壮. 荆州地区霉豆渣真菌多样性研究[J]. 食品与发酵工业, 2021, 47(6): 241-246.
[3] 李娜, 崔梦君, 马佳佳, 雷炎, 郭壮, 张振东. 基于Illumina MiSeq测序和传统可培养方法的洪湖鲊广椒乳酸菌多样性研究[J]. 食品与发酵工业, 2021, 47(4): 110-115.
[4] 尚雪娇, 方三胜, 朱媛媛, 赵慧君, 郭壮. 霉豆渣细菌多样性解析及基因功能预测[J]. 食品与发酵工业, 2021, 47(3): 36-42.
[5] 王俊奇, 黄卫红, 李双彤, 袁建军, 陈洪彬, 马应伦, 张秋芳. 永春老醋不同生产阶段细菌和真菌多样性动态变化特征分析[J]. 食品与发酵工业, 2021, 47(2): 38-44.
[6] 石佳佳, 齐天翊, 张萌, 陈淋霞, 张笛, 包智华. 自制酵素中乳酸菌群动态分析及对重金属的吸附积累特性[J]. 食品与发酵工业, 2021, 47(1): 14-20.
[7] 吴晓红, 高生平, 蒋彩云, 王清政. 榨菜发酵过程中原核微生物群落结构及其理化因子的动态演替[J]. 食品与发酵工业, 2021, 47(1): 27-34.
[8] 王俊钢, 李宇辉, 刘成江, 郭安民, 岳建平. 新疆哈萨克族传统风干肉中真菌多样性分析[J]. 食品与发酵工业, 2021, 47(1): 35-42.
[9] 刘振东, 毕娜, 李哲, 李梁, 罗章, 薛蓓, 汪雯翰. 西藏不同产区曲拉细菌群落结构的比较分析[J]. 食品与发酵工业, 2020, 46(6): 60-66.
[10] 崔梦君, 张振东, 万舒曼, 葛东颖, 郭壮. 农家豆瓣酱细菌多样性及其对品质影响的评价[J]. 食品与发酵工业, 2020, 46(5): 68-73.
[11] 陈可丹, 吴晓江, 陈延儒, 刘婷, 万茵, 刘成梅, 吴酬飞, 付桂明. 顶温对特香型大曲理化指标及菌群演替的影响[J]. 食品与发酵工业, 2020, 46(5): 52-58.
[12] 马江, 文鹏程, 罗俏俏, 曹磊, 朱艳, 杨敏, 张卫兵, 张忠明. 甘南牦牛曲拉中真菌群落结构[J]. 食品与发酵工业, 2020, 46(4): 51-56.
[13] 文开勇, 汪月, 文鹏程, 朱艳, 杨敏, 张忠明, 张卫兵. 四川传统腊肉中微生物群落结构研究[J]. 食品与发酵工业, 2020, 46(3): 36-42.
[14] 戈子龙, 张泽金, 周爱梅, 陈松, 钟青萍. 基于高通量测序与培养方法分析新鲜佛手与老香黄中的细菌多样性[J]. 食品与发酵工业, 2020, 46(3): 250-256.
[15] 李薇, 吴良如, 索化夷, 张甫生, 郑炯. 基于高通量测序方法研究腌制麻竹笋发酵过程中细菌群落的动态演替[J]. 食品与发酵工业, 2020, 46(24): 9-15.
No Suggested Reading articles found!
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
版权所有 © 《食品与发酵工业》编辑部
地址:北京朝阳区酒仙桥中路24号院6号楼111室
本系统由北京玛格泰克科技发展有限公司设计开发  技术支持:support@magtech.com.cn