Many environmental microbes cannot grow in synthesized
culture mediums. Therefore, the accuracy of plate count method for the
determination of microbial population was low. For fish sauce or similar high
salt foods, which usually harbor small microbial populations, it is more
difficult to quantify accurately the microbial population using plate count
method. The detection of microbial population with real-time fluorescent
quantitative PCR (FQ-PCR) method doesn’t rely on cultivation. Therefore, the paper investigated the
conditions of the detection of bacterial and
fungal populations using FQ-PCR. By comparing the amplification
effects of several sets of primers, the bacterial 16S
rDNA universal primer 63F-335R and the fungal 18S rDNA universal primer
0817F-1196R were respectively selected as the primers for FQ-PCR
detection of bacterial and fungal populations. And the annealing temperatures were determined to be 60 ℃. The selected
FQ-PCR primers and the annealing temperatures were validated using many strains
of bacteria and fungi. And for any single or mixed strains, the amplification efficiencies were
within 90% ~ 120% and the determination coefficients of the standard curves
were over 0.98. These results satisfy the requirements of quantification. The
bacterial and fungal populations in fish sauce and shrimp
sauce were detected by FQ-PCR using the above conditions. The results showed that during the fermentation of fish
sauce, the bacterial population varied within the range of 3.16×104- 3.16×105cells/ml,
far higher than the fungal population. Besides, the bacterial and fungal populations in fish sauce and shrimp sauce determined by the FQ-PCR method
were 1 - 2 orders of magnitude
higher than the results determined by plate count method.