腈水合酶底物通道入口调控催化活性的关键氨基酸位点的定位与改造

  • 张苇苗 ,
  • 程中一 ,
  • 周丽 ,
  • 周哲敏
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  • (江南大学 生物工程学院,江苏 无锡,214122)
第一作者:硕士研究生(周哲敏教授为通信作者,E-mail:zhmzhou@jiangnan.edu.cn)

收稿日期: 2021-09-13

  修回日期: 2021-10-11

  网络出版日期: 2022-05-26

基金资助

国家自然科学基金项目(21878125)

Modification of the key amino residues locating the substrate channel entrance of nitrile hydratase that regulate the enzyme activity

  • ZHANG Weimiao ,
  • CHENG Zhongyi ,
  • ZHOU Li ,
  • ZHOU Zhemin
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  • (School of Biotechnology, Jiangnan University, Wuxi 214122, China)

Received date: 2021-09-13

  Revised date: 2021-10-11

  Online published: 2022-05-26

摘要

腈水合酶(nitrile hydratase,NHase,EC 4.2.1.84)是一种催化腈类化合物生成酰胺类化合物的金属酶,工业上用于生物法生产丙烯酰胺和烟酰胺。由于腈类的水合反应是放热反应,工业上对腈水合酶的热稳定性较为关注。该实验室此前通过基因挖掘获得了具有高热稳定性的温泉热碱芽孢杆菌(Caldalkalibacillus thermarum TA2.A1)来源的腈水合酶,但其活性与工业生产要求有较大的差距,因此,提高该来源腈水合酶的酶活力具有重要意义。该研究采用分子动力学模拟的方法,通过对β亚基上位于腈水合酶底物通道入口的N47和N181这2个位点进行代表性氨基酸突变,破坏氢键,提高底物通道入口柔性,增强通道入口构象可变性,继而提高酶促反应催化效率。研究得到了最优突变体βN47F,与野生型酶相比,催化丙烯腈的比酶活力提高了2.57倍,且保持了良好的热稳定性,为工业化应用奠定了坚实的基础。

本文引用格式

张苇苗 , 程中一 , 周丽 , 周哲敏 . 腈水合酶底物通道入口调控催化活性的关键氨基酸位点的定位与改造[J]. 食品与发酵工业, 2022 , 48(9) : 8 -13 . DOI: 10.13995/j.cnki.11-1802/ts.029373

Abstract

Nitrile hydratase (nitrile hydratase, NHase, EC 4.2.1.84) is one type of metalloenzyme that catalyzes the formation of amides from nitriles. It is used in the biological production of acrylamide and nicotinamide in industry. Since the hydration of nitriles is an exothermic reaction, the thermal stability of nitrile hydratase attracted increasing attention. Previously, a novel nitrile hydratase derived from Caldalkalibacillus thermarum TA2.A1 was obtained through gene mining. Cal.t NHase possesses excellent thermal stability, while the enzyme activity is far behind the requirements of industrial production. Therefore, improving catalytic efficiency is important for its further applications. This study adopted molecular dynamics simulation methods and found two key residues, N47 and N181, located at the entrance of the substrate channel on the b subunit. Making representative residues mutations at these sites breaks the hydrogen bond, increases the flexibility of the substrate channel entrance, and then improves the enzyme activity. The optimal mutant, βN47F, compared with the wild-type enzyme, shows a 2.57-fold increase in acrylonitrile catalytic activity, and maintain good thermal stability at the same time. This variant enables the industrial application of Cal.t NHase in the future.

参考文献

[1] WOHLGEMUTH R.Biocatalysis—Key to sustainable industrial chemistry[J].Current Opinion in Biotechnology, 2010, 21(6):713-724.
[2] JIAO S, LI F L, YU H M, et al.Advances in acrylamide bioproduction catalyzed with Rhodococcus cells harboring nitrile hydratase[J].Applied Microbiology and Biotechnology, 2020, 104(3):1 001-1 012.
[3] LI B F, SU J H, TAO J H.Enzyme and process development for production of nicotinamide[J].Organic Process Research & Development, 2010, 15(1):291-293.
[4] CHEN J, HUANG Y T, DENG S G, et al.Biotransformation of adiponitrile to 5-cyanovaleramide by Pseudomonas sp. SY031 resting cells[J].Advanced Materials Research, 2013, 791-793:204-207.
[5] ASANO Y, TANI Y, YAMADA H.A new enzyme “nitrile hydratase” which degrades acetonitrile in combination with amidase[J].Agricultural and Biological Chemistry, 1980, 44(9):2 251-2 252.
[6] PRASAD S, RAJ J, BHALLA T C.Optimisation of culture conditions for hyper production of nitrile hydratase of Rhodococcus rhodochrous PA-34[J].Indian Journal of Microbiology, 2004, 44(4):251-256.
[7] YAMADA H, RYUNO K, NAGASAWA T, et al.Optimum culture conditions for production by Pseudomonas chlororaphis B23 of nitrile hydratase[J].Agricultural and Biological Chemistry, 1986, 50(11):2 859-2 865.
[8] TAKASHIMA Y, KAWABE T, MITSUDA S.Factors affecting the production of nitrile hydratase by thermophilic Bacillus smithii SC-J05-1[J].Journal of Bioscience and Bioengineering, 2000, 89(3):282-284.
[9] WANG Z, LIU Z M, CUI W J, et al.Establishment of bioprocess for synthesis of nicotinamide by recombinant Escherichia coli expressing high-molecular-mass nitrile hydratase[J].Applied Biochemistry and Biotechnology, 2017, 182(4):1 458-1 466.
[10] KANG M S, HAN S S, KIM M Y, et al.High-level expression in Corynebacterium glutamicum of nitrile hydratase from Rhodococcus rhodochrous for acrylamide production[J].Applied Microbiology and Biotechnology, 2014, 98(10):4 379-4 387.
[11] SHI Y, YU H M, SUN X D, et al.Cloning of the nitrile hydratase gene from Nocardia sp. in Escherichia coli and Pichia pastoris and its functional expression using site-directed mutagenesis[J].Enzyme and Microbial Technology, 2004, 35(6-7):557-562.
[12] WATANABE I, SATOH Y, ENOMOTO K.Screening, isolation and taxonomical properties of microorganisms having acrylonitrile-hydrating activity[J].Agricultural and Biological Chemistry, 1987, 51(12):3 193-3 199.
[13] YAMADA H, KOBAYASHI M.Nitrile hydratase and its application to industrial production of acrylamide[J].Bioscience, Biotechnology, and Biochemistry, 1996, 60(9):1 391-1 400.
[14] SAKASHITA T, HASHIMOTO Y, OINUMA K I, et al.Transcriptional regulation of the nitrile hydratase gene cluster in Pseudomonas chlororaphis B23[J].Journal of Bacteriology, 2008, 190(12):4 210-4 217.
[15] COWAN D, CRAMP R, PEREIRA R, et al.Biochemistry and biotechnology of mesophilic and thermophilic nitrile metabolizing enzymes[J].Extremophiles, 1998, 2(3):207-216.
[16] 张赛兰, 李婷, 程中一, 等.新型耐热腈水合酶的异源表达及其催化工艺研究[J].食品与发酵工业, 2020, 46(14):108-113.
ZHANG S L, LI T, CHENG Z Y, et al.Heterologous expression of a novel thermostable nitrile hydratase and its catalytic process[J].Food and Fermentation Industries, 2020, 46(14):108-113.
[17] LUTZ S.Beyond directed evolution—Semi-rational protein engineering and design[J].Current Opinion in Biotechnology, 2010, 21(6):734-743.
[18] PAVLOVA M, KLVANA M, PROKOP Z, et al.Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate[J].Nature Chemical Biology, 2009, 5(10):727-733.
[19] 张赛兰. 新型耐热腈水合酶的异源表达及酶学性质研究[D].无锡:江南大学, 2020.
ZHANG S L.Heterologous expression and enzymatic property study of a novel thermostable nitrile hydratase[D].Wuxi:Jiangnan University, 2020.
[20] CHENG Z Y, CUI W J, LIU Z M, et al.A switch in a substrate tunnel for directing regioselectivity of nitrile hydratases towards a,w-dinitriles[J].Catalysis Science & Technology, 2016, 6(5):1 292-1 296.
[21] NESTL B M, HAUER B.Engineering of flexible loops in enzymes[J].ACS Catalysis, 2014, 4(9):3 201-3 211.
[22] YU H R, HUANG H.Engineering proteins for thermostability through rigidifying flexible sites[J].Biotechnology Advances, 2014, 32(2):308-315.
[23] TIAN J, WANG P, GAO S, et al.Enhanced thermostability of methyl parathion hydrolase from Ochrobactrum sp.M231 by rational engineering of a glycine to proline mutation[J].The FEBS Journal, 2010, 277(23):4 901-4 908.
[24] LIU J, YU H M, SHEN Z Y.Insights into thermal stability of thermophilic nitrile hydratases by molecular dynamics simulation[J].Journal of Molecular Graphics and Modelling, 2008, 27(4):529-535.
[25] YANG J Y, ANISHCHENKO I, PARK H, et al.Improved protein structure prediction using predicted interresidue orientations[J].Proceedings of the National Academy of Sciences, 2020, 117(3):1 496-1 503.
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