研究报告

大肠杆菌中利用整合型蛋白支架合成维生素B6

  • 王腾鹤 ,
  • 王岩岩 ,
  • 刘林霞 ,
  • 乔长晟 ,
  • 张大伟
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  • 1(天津科技大学 生物工程学院,天津,300457)
    2(中国科学院 天津工业生物技术研究所,天津,300308)
    3(中国科学院大学,北京,300192)
第一作者:硕士研究生(张大伟研究员为通信作者,E-mail:zhang_dw@tib.cas.cn)

收稿日期: 2023-01-06

  修回日期: 2023-02-13

  网络出版日期: 2023-08-07

基金资助

国家重点研发计划项目(2022YFC2106100);国家自然科学基金项目(32200049);天津市合成生物技术创新能力提升行动(TSBICIP-CXRC-004)

Synthetic scaffolds increased vitamin B6 biosynthesis in engineered Escherichia coli cells

  • WANG Tenghe ,
  • WANG Yanyan ,
  • LIU Linxia ,
  • QIAO Changsheng ,
  • ZHANG Dawei
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  • 1(College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, China)
    2(Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China)
    3(University of Chinese Academy of Sciences, Beijing 300192, China)

Received date: 2023-01-06

  Revised date: 2023-02-13

  Online published: 2023-08-07

摘要

维生素B6是重要的水溶性维生素之一,在生物医药、饲料及食品美容等方面具有广泛的应用。目前工业上通常采用噁唑法生产维生素B6,该方法存在安全隐患,易造成环境污染。该研究以大肠杆菌为底盘细胞构建了具有潜力的环境友好型维生素B6细胞工厂。为了降低中间代谢物4-磷酸羟基-L-苏氨酸(4-hydroxy-L-threonine,4HTP)对大肠杆菌的生物毒性,提升维生素B6在大肠杆菌中的发酵产量,通过构建整合型蛋白支架,并结合随机突变技术对关键酶PdxA3进行了改造。结果显示,4种不同来源的4HTP脱氢酶(PdxA)中,Sinorhizobium meliloti来源的PdxA3活性最高,使产量达到2.24 mg/L;针对PdxA3进行的随机突变使维生素B6产量提升了60%,产量达到3.92 mg/L;整合型蛋白支架优化比例为1∶1∶2时,产量有了大幅提升,与出发菌株相比,产量提升约20倍,最终达到了21.23 mg/L。通过实验发现,最适来源和最优表达比例的途径酶能使产量大幅提升。该研究基于蛋白支架技术,避免了代谢过程有毒中间产物过度积累,对于大肠杆菌维生素B6工程菌株的构建具有重要作用。

本文引用格式

王腾鹤 , 王岩岩 , 刘林霞 , 乔长晟 , 张大伟 . 大肠杆菌中利用整合型蛋白支架合成维生素B6[J]. 食品与发酵工业, 2023 , 49(13) : 17 -22 . DOI: 10.13995/j.cnki.11-1802/ts.034781

Abstract

Vitamin B6 is one of the important water-soluble vitamins, which has been widely applied in biomedicine, feed, food ,and beauty industries. At present, oxazole method is usually used for the production of vitamin B6 in industry, which has safety risks and causes environmental pollution. In this study, we constructed a potential and environmental vitamin B6 cell factory using Escherichia coli as chassis cells. In order to enhance the fermentation yield of vitamin B6 in E. coli and reduce the biotoxicity of the intermediate metabolite 4-hydroxy-L-threonine (4HTP) to E. coli, the key enzymes were modified by constructing an integrated protein scaffold and combining with random mutation technology. The results showed that among four different sources of 4HTP dehydrogenase (PdxA), PdxA3 from Sinorhizobium meliloti had the highest activity, reaching a yield of 2.24 mg/L; random mutation targeting PdxA3 resulted in a 60% increase in vitamin B6 titer, with a yield of 3.92 mg/L; the protein scaffold optimized at a ratio of 1∶1∶2 resulted in a greatly improved, with an approximately 20-fold increase in yield, compared to the starting strain, and eventually reached 21.23 mg/L. It was found that the pathway enzyme with optimal source and optimal expression ratio could significantly increase titer. This study is based on protein scaffolding technology, which avoids excessive accumulation of toxic intermediates in the metabolic process and is important for the construction of E. coli vitamin B6 engineered strains.

参考文献

[1] FITZPATRICK T, AMRHEIN N, KAPPES B, et al.Two independent routes of de novo vitamin B6 biosynthesis:Not that different after all[J].Biochemical Journal, 2007, 407(1):1-13.
[2] KRAEMER K, SEMBA R D, EGGERSDORFER M, et al.Introduction:The diverse and essential biological functions of vitamins[J].Annals of Nutrition & Metabolism, 2012, 61(3):185-191.
[3] ACEVEDO-ROCHA C G, GRONENBERG L S, MACK M, et al.Microbial cell factories for the sustainable manufacturing of B vitamins[J].Current Opinion in Biotechnology, 2019, 56:18-29.
[4] ZOU Y, SHI X J, ZHANG G B, et al.Improved “oxazole” method for the practical and efficient preparation of pyridoxine hydrochloride (vitamin B6)[J].Organic Process Research & Development, 2013, 17(12):1498-1502.
[5] PARRA M, STAHL S, HELLMANN H.Vitamin B6 and its role in cell metabolism and physiology[J].Cells, 2018, 7(7):84.
[6] ROSENBERG J, YEAK K C, COMMICHAU F M.A two-step evolutionary process establishes a non-native vitamin B6 pathway in Bacillus subtilis[J].Environmental Microbiology, 2018, 20(1):156-168.
[7] ZHAO G, PEASE A J, BHARANI N, et al.Biochemical characterization of gapB-encoded erythrose 4-phosphate dehydrogenase of Escherichia coli K-12 and its possible role in pyridoxal 5′-phosphate biosynthesis[J].Journal of Bacteriology, 1995, 177(10):2804-2812.
[8] JOHN R A.Pyridoxal phosphate-dependent enzymes[J].Biochimica et Biophysica Acta, 1995, 1248(2):81-96.
[9] TRAMONTI A, NARDELLA C, DI SALVO M L, et al.Knowns and unknowns of vitamin B6 metabolism in Escherichia coli[J].EcoSal Plus, 2021, 9(2).DOI:10.1128/ecosalplus.ESP-0004-2021.
[10] ROSENBERG J, ISCHEBECK T, COMMICHAU F M.Vitamin B6 metabolism in microbes and approaches for fermentative production[J].Biotechnology Advances, 2017, 35(1):31-40.
[11] WEI L, WANG Q, XU N, et al.Combining protein and metabolic engineering strategies for high-level production of O-acetylhomoserine in Escherichia coli[J].ACS Synthetic Biology, 2019, 8(5):1153-1167.
[12] MUKHERJEE T, HANES J, TEWS I, et al.Pyridoxal phosphate:Biosynthesis and catabolism[J].Biochimica et Biophysica Acta (BBA) -Proteins and Proteomics, 2011, 1814(11):1585-1596.
[13] 王琛, 赵猛, 丁明珠, 等.生物支架系统在合成生物学中的应用[J].化工进展, 2020, 39(11):4557-4567.
WANG C, ZHAO M, DING M Z, et al.Application of biological scaffold system on synthetic biology[J].Chemical Industry and Engineering Progress, 2020, 39(11):4557-4567.
[14] CHEN A H, SILVER P A.Designing biological compartmentalization[J].Trends in Cell Biology, 2012, 22(12):662-670.
[15] DUEBER J E, WU G C, MALMIRCHEGINI G R, et al.Synthetic protein scaffolds provide modular control over metabolic flux[J].Nature Biotechnology, 2009, 27(8):753-759.
[16] MOON T S, DUEBER J E, SHIUE E, et al.Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E.coli[J].Metabolic Engineering, 2010, 12(3):298-305.
[17] WANG Y C, YU O.Synthetic scaffolds increased resveratrol biosynthesis in engineered yeast cells[J].Journal of Biotechnology, 2012, 157(1):258-260.
[18] ANDERSON J C, DUEBER J E, LEGUIA M, et al.BglBricks:A flexible standard for biological part assembly[J].Journal of Biological Engineering, 2010, 4(1):1.
[19] HORN A H C, STICHT H.Synthetic protein scaffolds based on peptide motifs and cognate adaptor domains for improving metabolic productivity[J].Frontiers in Bioengineering and Biotechnology, 2015, 3:191.
[20] ZEKE A, LUKÁCS M, LIM W A, et al.Scaffolds:Interaction platforms for cellular signalling circuits[J].Trends in Cell Biology, 2009, 19(8):364-374.
[21] ITO T, YAMAMOTO K, HORI R, et al.Conserved pyridoxal 5′-phosphate-binding protein YggS impacts amino acid metabolism through pyridoxine 5′-phosphate in Escherichia coli[J].Applied and Environmental Microbiology, 2019, 85(11):e00430-e00419.
[22] TAZOE M, ICHIKAWA K, HOSHINO T.Production of vitamin B6 in Rhizobium[J].Bioscience, Biotechnology, and Biochemistry, 1999, 63(8):1378-1382.
[23] SHETTY R P, ENDY D, JR KNIGHT T F.Engineering BioBrick vectors from BioBrick parts[J].Journal of Biological Engineering, 2008, 2:5.
[24] RUDOLPH J, KIM J, COPLEY S D.Multiple turnovers of the nicotino-enzyme PdxB require α-keto acids as cosubstrates[J].Biochemistry, 2010, 49(43):9249-9255.
[25] COMMICHAU F M, ALZINGER A, SANDE R, et al.Overexpression of a non-native deoxyxylulose-dependent vitamin B6 pathway in Bacillus subtilis for the production of pyridoxine[J].Metabolic Engineering, 2014, 25:38-49.
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