研究报告

E49F对麦氏交替单胞菌木聚糖酶XynZT-2的活性分析

  • 石嘉宁 ,
  • 吴俊涛 ,
  • 崔彩霞 ,
  • 李同彪 ,
  • 周晨妍
展开
  • 1(新乡医学院 生命科学技术学院,河南省合成生物学工程实验室,河南 新乡,453003)
    2(黄淮学院 生物与食品工程学院,河南省农(副)产品资源化利用工程研究中心,河南 驻马店,463000)
第一作者:硕士研究生(李同彪讲师和周晨妍教授为共同通信作者,E-mail:tongbiaoli@163.com;zhouchenyan2008@163.com)

收稿日期: 2022-12-03

  修回日期: 2023-01-28

  网络出版日期: 2023-11-20

基金资助

河南省科技厅科技攻关项目(212102210652;222102110372);河南省高等学校重点科研项目(21A180024;22A180022)

Effect of E49F on the activity of xylanase XynZT-2 from Alteromonas macleodii

  • SHI Jianing ,
  • WU Juntao ,
  • CUI Caixia ,
  • LI Tongbiao ,
  • ZHOU Chenyan
Expand
  • 1(Synthetic Biology Engineering Laboratory of Henan Province, School of Life Science and Technology, Xinxiang Medical University, Xinxiang 453003, China)
    2(Resource Utilization of Agricultural (by-products) Engineering Research Center of Henan Province, School of Biological and Food engineering, Huanghuai University, Zhumadian 463000, China)

Received date: 2022-12-03

  Revised date: 2023-01-28

  Online published: 2023-11-20

摘要

为了探究酶表面氨基酸残基对催化性能的影响,对麦氏交替单胞菌(Alteromonas macleodii)的木聚糖酶XynZT-2进行分子改造。基于计算机模拟,预测了潜在的有益突变体E49F,通过定点突变构建突变酶基因xynZT-2E49F,并将原酶与突变酶基因转化大肠杆菌BL21(DE3)异源表达。酶学性质分析发现,突变酶XynEF最适温度为70 ℃,相比原酶XynZT-2提高了25 ℃,酶活力提高了6.4倍。酶动力学分析发现,突变酶的kcat/Km值相比原酶提高了10.1倍,突变酶的Km值明显下降,对底物的亲和力增强。通过酶与底物分子对接,揭示了底物在突变酶催化活性口袋内的结合构象以及酶活力提高的潜在原因。为GH43家族木聚糖酶的分子改造研究提供了基础。

本文引用格式

石嘉宁 , 吴俊涛 , 崔彩霞 , 李同彪 , 周晨妍 . E49F对麦氏交替单胞菌木聚糖酶XynZT-2的活性分析[J]. 食品与发酵工业, 2023 , 49(20) : 221 -227 . DOI: 10.13995/j.cnki.11-1802/ts.034509

Abstract

To explore the effect of amino acid residues above enzyme surface on the catalytic properties, the molecular modification of xylanase XynZT-2 from Alteromonas macleodii was designed. Based on the computer simulation, the potential beneficial mutant E49F was predicted, and the mutant enzyme gene xynZT-2E49F was constructed by site-directed mutagenesis. Then the proenzyme and mutant enzyme gene were transformed into E. coli BL21(DE3) for heterologous expression. Enzymic properties analysis showed that the optimum temperature of the mutant enzyme XynEF was 70 ℃, which was 25 ℃ higher than that of the original XynZT-2, and the enzyme activity of XynEF was 6.4 times higher than that of XynZT-2. The kcat/Km value of the mutant enzyme was 10.1 times higher than that of the original enzyme. The Km value of the mutant enzyme was significantly decreased, and the affinity of the mutant enzyme to the substrate was enhanced. The binding conformation of the substrate in the catalytic activity pocket of the mutant enzyme and the potential reason for the improvement of enzyme activity were revealed by the molecular docking of the enzyme with the substrate molecule. It provides a basis for the molecular modification of GH43 family xylanase.

参考文献

[1] LONG L F, ZHANG Y B, REN H Y, et al.Recombinant expression of Aspergillus niger GH10 endo-xylanase in Pichia pastoris by constructing a double-plasmid co-expression system[J].Journal of Chemical Technology & Biotechnology, 2020, 95(3):535-543.
[2] TILL M, GOLDSTONE D, CARD G, et al.Structural analysis of the GH43 enzyme Xsa43E from Butyrivibrio proteoclasticus[J].Acta Crystallographica, Section F, Structural Biology Communications, 2014, 70(Pt9):1193-1198.
[3] NOROUZI S, BIRGANI N H, MAGHAMI P, et al.Improvement of PersiXyn2 activity and stability in presence of trehalose and proline as a natural osmolyte[J].International Journal of Biological Macromolecules, 2020, 163:348-357.
[4] 刘国锋. 大肠杆菌工程菌产木聚糖酶工艺优化及酶学性质研究[J].食品与机械, 2018, 34(2):25-30.
LIU G F.Study on technology and enzymatic property of xylanase produced from engineered Escherichia coli[J].Food and Machinery, 2018, 34(2):25-30.
[5] 张燕青, 张超群, 王浩猛.木聚糖酶的分子改造方法及其工业应用研究现状[J].中国酿造, 2018, 37(1):25-29.
ZHANG Y Q, ZHANG C Q, WANG H M.Research status of xylanase molecular modification and industrial application[J].China Brewing, 2018, 37(1):25-29.
[6] DILEEPA M S, EUNYOUNG J, AMARIN H S, et al.Characterization of glycoside hydrolase family 11 xylanase from Streptomyces sp.strain J103;its synergetic effect with acetyl xylan esterase and enhancement of enzymatic hydrolysis of lignocellulosic biomass[J].Microbial Cell Factories, 2021, 20(1):129.
[7] KONG H Y, JIANG X, WANG Y, et al.Fusion expression of β-mannanaseman5A and xylanase Tlxyn11B in Pichia pastoris[J].Chinese Journal of Biotechnology, 2020, 36(9):1849-1858.
[8] YANG S, YANG B, DUAN C, et al.Applications of enzymatic technologies to the production of high-quality dissolving pulp:A review[J].Bioresource Technology, 2019, 281:440-448.
[9] 任春霖, 董红丽, 王风芹, 等.低聚木糖生产技术及其对动物益生作用研究进展[J].食品与发酵工业, 2021, 47(9):293-298.
REN C L, DONG H L, WANG F Q, et al.Research progress of xylooligosaccharides production technology and its prebiotic effect on animals[J].Food and Fermentation Industries, 2021, 47(9):293-298.
[10] 李青飞, 刘越, 言行, 等.高温木聚糖酶Pthxyn酶学性质及其在啤酒酿造中的应用[J].食品科学, 2023,44(10): 181-187.
LI Q F, LIU Y, YAN X, et al.Enzymatic properties of thermophilic xylanase Pthxyn and its application in beer brewing[J].Food Science, 2023,44(10): 181-187.
[11] CAYETANO-CRUZ M, CARO-GÓMEZ L A, PLASCENCIA-ESPINOSA M, et al.Effect of the single mutation N9Y on the catalytical properties of xylanase Xyn11A from Cellulomonas uda:A biochemical and molecular dynamic simulation analysis[J].Bioscience, Biotechnology, and Biochemistry, 2021, 85(9):1971-1985.
[12] SUZUKI M, TAKITA T, KUWATA K, et al.Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp.strain TAR-1 by the mutation of S92 to E[J].Bioscience, Biotechnology, and Biochemistry, 2021, 85(2):386-390.
[13] ZHENG H C, LIU Y H, SUN M Z, et al.Improvement of alkali stability and thermostability of Paenibacillus campinasensis Family-11 xylanase by directed evolution and site-directed mutagenesis[J].Journal of Industrial Microbiology & Biotechnology, 2014, 41(1):153-162.
[14] 李秀婷, 朱唯嘉, 吴秋华, 等.二硫键影响GH11木聚糖酶稳定性研究进展[J].食品科学技术学报, 2022, 40(5):14-27.
LI X T, ZHU W J, WU Q H, et al. Research progress on the effect of disulfide bonds on the stability of GH11 xylanase. Journal of Food Science and Technology, 2022, 40(5):14-27.
[15] SAMBROOK J,RUSSELL D W.分子克隆实验指南. 黄培堂等译. 北京: 科学出版社, 2002: 622-666.
SAMBROOK J,RUSSELL D W. Guidelines for Molecular Cloning Experiments. HUANG P T translate. The third edition. Beijing: Science Press, 2002: 622-666.
[16] ZOUARI AYADI D, HMIDA SAYARI A, BEN HLIMA H, et al.Improvement of Trichoderma reesei xylanase Ⅱ thermal stability by serine to threonine surface mutations[J].International Journal of Biological Macromolecules, 2015, 72:163-170.
[17] BIASINI M, BIENERT S, WATERHOUSE A, et al.SWISS-MODEL:Modelling protein tertiary and quaternary structure using evolutionary information[J].Nucleic Acids Research, 2014, 42(W1):W252-W258.
[18] MROUEH M, ARUANNO M, BORNE R, et al.The xyl-doc gene cluster of Ruminiclostridium cellulolyticum encodes GH43- and GH62-α-l-arabinofuranosidases with complementary modes of action[J].Biotechnology for Biofuels, 2019, 12:144.
[19] YOKOYAMA K, UTSUMI H, NAKAMURA T, et al.Screening for improved activity of a transglutaminase from Streptomyces mobaraensis created by a novel rational mutagenesis and random mutagenesis[J].Applied Microbiology and Biotechnology, 2010, 87(6):2087-2096.
[20] 任蕊蕊, 刘松, 李江华, 等.分子改造提高谷氨酰胺转氨酶的催化活性[J].食品与发酵工业, 2018, 44(9):9-14.
REN R R, LIU S, LI J H, et al.Improved catalytic activity of transglutaminase through molecular modification[J].Food and Fermentation Industries, 2018, 44(9):9-14.
[21] NOEY E L, TIBREWAL N, JIMÉNEZ-OSÉS G, et al.Origins of stereoselectivity in evolved ketoreductases[J].Proceedings of the National Academy of Sciences of the United States of America, 2015, 112(51):E7065-E7072.
[22] ZHANG X, LI W, PAN L X, et al.Improving the thermostability of alginate lyase FlAlyA with high expression by computer-aided rational design for industrial preparation of alginate oligosaccharides[J].Frontiers in Bioengineering and Biotechnology, 2022, 10:1011273.
[23] LIU Z Z, WANG Y F, LIU S H, et al.Boosting the heterologous expression of d-allulose 3-epimerase in Bacillus subtilis through protein engineering and catabolite-responsive element box engineering[J].Journal of Agricultural and Food Chemistry, 2022, 70(38):12128-12134.
文章导航

/