研究报告

基于高通量测序与分离鉴定方法解析奉节和巫山鲊广椒微生物多样性

  • 张振东 ,
  • 李学富 ,
  • 肖秋杨 ,
  • 詹捷 ,
  • 赵慧君 ,
  • 郭壮 ,
  • 王玉荣
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  • 1(黔南民族师范学院 生物科学与农学院,贵州 都匀,558000)
    2(湖北文理学院,湖北省食品配料工程技术研究中心,湖北 襄阳,441053)
    3(湖北文理学院,乳酸菌生物技术与工程襄阳市重点实验室,湖北 襄阳,441053)
第一作者:博士,讲师(王玉荣讲师为通信作者,E-mail:wangyurong1993@163.com)

收稿日期: 2023-01-30

  修回日期: 2023-03-02

  网络出版日期: 2024-01-17

基金资助

湖北省自然科学基金创新发展联合基金项目(2022CFD008);黔南民族师范学院支持引进高层次人才研究专项项目(qnsyrc2022011);湖北文理学院教师科研能力培育基金(2020kypygp010)

Microbial diversity of Zha-chili from Fengjie and Wushan County using high-throughput sequencing and isolation and identification-based methods

  • ZHANG Zhendong ,
  • LI Xuefu ,
  • XIAO Qiuyang ,
  • ZHAN Jie ,
  • ZHAO Huijun ,
  • GUO Zhuang ,
  • WANG Yurong
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  • 1(College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun 558000, China)
    2(Hubei Provincial Engineering and Technology Research Center for Food Ingredients, Hubei University of Arts and Science, Xiangyang 441053, China)
    3(Xiangyang Lactic Acid Bacteria Biotechnology and Engineering Key Laboratory, Hubei University of Arts and Science, Xiangyang 441053, China)

Received date: 2023-01-30

  Revised date: 2023-03-02

  Online published: 2024-01-17

摘要

为解析重庆地区鲊广椒微生物菌群结构特点,结合高通量测序技术与分离鉴定方法,对重庆地区巫山与奉节采集的鲊广椒菌群进行了分析。结果发现,这两个地区的鲊广椒的优势属有11个,其中乳杆菌属(Lactobacillus),促生乳杆菌属(Levilactobacillus),迟缓乳杆菌属(Lentilactobacillus),伴生乳杆菌属(Companilactobacillus),魏斯氏菌属(Weissella)和普雷沃菌属(Prevotella)含量大于5%。值得注意的是,从巫山鲊广椒检测到了丰度较高的普雷沃菌属和梭菌属(Clostridium)。基于线性判别分析效应值(linear discriminant analysis effect size,LEfSe),普雷沃菌属和塔特姆菌属(Tatumella)分别作为巫山和奉节鲊广椒的生物标志属。通过分离鉴定,从重庆地区鲊广椒中分离到了18株乳酸菌,鉴定为8个菌属。结合高通量测序技术与分离鉴定方法,可将重庆地区鲊广椒的优势属促生乳杆菌属和迟缓乳杆菌属分别鉴定为短促生乳杆菌(Levilactobacillus brevis)和布氏迟缓乳杆菌(Lentilactobacillus buchneri)。该研究预期能为鲊广椒的产业化发展提供菌株资源与数据支撑。

本文引用格式

张振东 , 李学富 , 肖秋杨 , 詹捷 , 赵慧君 , 郭壮 , 王玉荣 . 基于高通量测序与分离鉴定方法解析奉节和巫山鲊广椒微生物多样性[J]. 食品与发酵工业, 2023 , 49(24) : 178 -185 . DOI: 10.13995/j.cnki.11-1802/ts.034967

Abstract

To analyze the characteristics of microbial flora of Zha-chili from Wushan and Fengjie County in Chongqing, high-throughput sequencing and isolation and identification-based methods were used. Based on the results of high-throughput sequencing, there were 11 dominant genera in Zha-chili from the two regions, including Lactobacillus, Levactobacter, Levilactobacillus, Companilactobacter, Weissella, and Prevotella, with the relative abundance of more than 5%. It is notable that there was a high relative abundance of Prevotella and Clostridium in Zha-chili samples from Wushan County. Based on linear discriminant analysis effect size (LEfSe) analysis, Prevotella, and Tatumella could be used as biomarker genera to distinguish Zha-chili in Wushan and Fengjie, respectively. Eighteen LAB strains were isolated from Zha-chili in Chongqing by isolation and identification-based methods, and they were identified as eight genera. Combining high-throughput sequencing and isolation and identification methods, the dominant genera of Levilactobacillus and Lentilactobacillus were identified as Levilactobacillus brevis and Lentilactobacillus buchneri, respectively. This research is expected to provide strain resources and data support for the industrialization development of Zha-chili.

参考文献

[1] DE SOUZA E L, DE OLIVEIRA K Á, DE OLIVEIRA M E.Influence of lactic acid bacteria metabolites on physical and chemical food properties[J].Current Opinion in Food Science, 2023, 49:100981
[2] 姚粟, 王鹏辉, 白飞荣, 等.中国传统发酵食品用微生物菌种名单研究(第二版)[J].食品与发酵工业, 2022, 48(1):272-307.
YAO S, WANG P H, BAI F R, et al.Research on the inventory of microbial food cultures in Chinese traditional fermented foods (2nd edition)[J].Food and Fermentation Industries, 2022, 48(1):272-307.
[3] 陈坚, 汪超, 朱琪, 等.中国传统发酵食品研究现状及前沿应用技术展望[J].食品科学技术学报, 2021, 39(2):1-7.
CHEN J, WANG C, ZHU Q, et al.Research status and application prospect of frontier technology of traditional fermented food in China[J].Journal of Food Science and Technology, 2021, 39(2):1-7.
[4] CAI W C, WANG Y R, HOU Q C, et al.PacBio sequencing combined with metagenomic shotgun sequencing provides insight into the microbial diversity of Zha-chili[J].Food Bioscience, 2021, 40:100884.
[5] CAI W C, WANG Y R, HOU Q C, et al.Rice varieties affect bacterial diversity, flavor, and metabolites of Zha-chili[J].Food Research International, 2021, 147:110556.
[6] GUO Z, WANG Y R, XIANG F S, et al.Evaluating the flavor and divergent bacterial communities in corn-based Zha-chili[J].Food Bioscience, 2022, 46:101563.
[7] 吴成, 王春晓, 王晓丹,等.高通量测序技术在酿酒微生物多样性研究中的应用[J].食品科学, 2019, 40(3):348-355.
WU C, WANG C X, WANG X D, et al.A review of the application of high-throughput sequencing technology in analysis of the diversity of microbial communities involved in the fermentation of alcoholic beverages[J].Food Science, 2019, 40(3):348-355.
[8] GUO Z, WANG Y R, XIANG F S, et al.Bacterial diversity in pickled Cowpea (Vigna unguiculata[Linn.] Walp) as determined by Illumina MiSeq sequencing and culture-dependent methods[J].Current Microbiology, 2021, 78(4):1286-1297.
[9] CAPORASO J G, KUCZYNSKI J, STOMBAUGH J, et al.QIIME allows analysis of high-throughput community sequencing data[J].Nature Methods, 2010, 7(5):335-336.
[10] EDGAR R C.Search and clustering orders of magnitude faster than BLAST[J].Bioinformatics, 2010, 26(19):2460-2461.
[11] COLE J R, WANG Q, FISH J A, et al.Ribosomal Database Project:Data and tools for high throughput rRNA analysis[J].Nucleic Acids Research, 2014, 42(D1):D633-D642.
[12] SEGATA N, IZARD J, WALDRON L, et al.Metagenomic biomarker discovery and explanation[J].Genome Biology, 2011, 12(6):R60.
[13] LASLO V, PINZARU S C, ZAGUŁA G, et al.Synergic effect of selenium nanoparticles and lactic acid bacteria in reduction cadmium toxicity[J].Journal of Molecular Structure, 2022, 1247:131325.
[14] OSBORNE C A, GALIC M, SANGWAN P, et al.PCR-generated artefact from 16S rRNA gene-specific primers[J].FEMS Microbiology Letters, 2005, 248(2):183-187.
[15] KUMAR S, STECHER G, LI M, et al.MEGA X:Molecular evolutionary genetics analysis across computing platforms[J].Molecular Biology and Evolution, 2018, 35(6):1547-1549.
[16] 李娜, 崔梦君, 马佳佳, 等.基于Illumina MiSeq测序和传统可培养方法的洪湖鲊广椒乳酸菌多样性研究[J].食品与发酵工业, 2021, 47(4):110-115;122.
LI N, CUI M J, MA J J, et al.Lactic acid bacterial diversity of Zha-chili in Honghu County based on Illumina Miseq sequencing and traditional culture method[J].Food and Fermentation Industries, 2021, 47(4):110-115;122.
[17] SHARMA G, GARG N, HASAN S, et al.Prevotella:An insight into its characteristics and associated virulence factors[J].Microbial Pathogenesis, 2022, 169:105673.
[18] AAKKO J, PIETILÄ S, TOIVONEN R, et al.A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota[J].Scientific Reports, 2020, 10:12411.
[19] WANG J, YIN Y.Clostridium species for fermentative hydrogen production:An overview[J].International Journal of Hydrogen Energy, 2021, 46:34599-34625.
[20] 勾文君, 田源, 孔小勇, 等.洋河酒窖泥细菌群落结构与菌株产酸能力分析[J].微生物学通报, 2020, 47(6):1651-1661.
GOU W J, TIAN Y, KONG X Y, et al.Bacterial composition in pit mud of Yanghe liquor and identification of acid producing bacteria[J].Microbiology China, 2020, 47(6):1651-1661.
[21] KHUSRO A, AARTI C.Metabolic heterogeneity and techno-functional attributes of fermented foods-associated coagulase-negative staphylococci[J].Food Microbiology, 2022, 105:104028.
[22] 刘玥. 木糖葡萄球菌干粉保护剂的研究及其在发酵香肠中的应用[D].扬州:扬州大学, 2020.
LIU Y.Study on dry powder protective agent of Staphylococcus xylose and its application in fermented sausage[D].Yangzhou:Yangzhou University, 2020.
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