研究报告

基于酿酒酵母多拷贝系统策略提高三乙酸内酯的产量

  • 韦欢 ,
  • 林苹鑫 ,
  • 刘秀霞 ,
  • 刘春立 ,
  • 杨艳坤 ,
  • 李业 ,
  • 白仲虎
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  • 1(江南大学,粮食发酵与食品生物制造国家工程研究中心,江苏 无锡,214122)
    2(江南大学,工业生物技术教育部重点实验室,江苏 无锡,214122)
    3(韩国科学技术院环境与分子微生物实验室,韩国 大田广域,34141)
第一作者:硕士研究生(李业助理研究员和白仲虎教授为共同通信作者,E-mail:yeli0622@jiangnan.edu.cn;baizhonghu@jiangnan.edu.cn)

收稿日期: 2024-02-08

  修回日期: 2024-03-18

  网络出版日期: 2025-03-10

基金资助

国家自然科学基金(21878124)

Efficient production of triacetic acid lactone using a multi-copy integration system in Saccharomyces cerevisiae

  • WEI Huan ,
  • LIN Pingxin ,
  • LIU Xiuxia ,
  • LIU Chunli ,
  • YANG Yankun ,
  • LI Ye ,
  • BAI Zhonghu
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  • 1(National Engineering Research Center for Cereal Fermentation and Food Biomanufacturing, Jiangnan University, Wuxi 214122, China)
    2(The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China)
    3(Environmental and Molecular Microbiology Laboratory, Korea Advanced Institute of Science and Technology, Daejeon 34141, South Korea)

Received date: 2024-02-08

  Revised date: 2024-03-18

  Online published: 2025-03-10

摘要

三乙酸内酯(triacetic acid lactone, TAL)是一种具有广泛应用前景的聚酮,可用作各种有机化合物的前体。为了提高酿酒酵母(Saccharomyces cerevisiae)中TAL的产量,该研究利用基因组重复序列整合的方法构建了S.cerevisiae多拷贝整合系统,应用该系统提高TAL的生产。首先以绿色荧光蛋白表征多拷贝Delta1整合,通过截短遗传霉素和潮霉素B两种抗生素基因的启动子以及增加抗生素浓度的方法增加筛选压力,进而提高整合效率和拷贝数,最优参数为将抗生素基因启动子截短至15 bp的同时采用160 μg/mL的抗生素。将该优化系统随后用于新的多拷贝整合位点Delta2的表征。最后应用该系统合成TAL,通过HPLC分析TAL产量。结果表明,利用Delta1和Delta2序列表征绿色荧光蛋白的最高拷贝数分别为10和7,Delta1略优于Delta2。应用该系统在S.cerevisiae中合成TAL,Delta1和Delta2的产量分别为1.50、1.17 mmol/L,比单拷贝菌株产量分别提高460%和337%。该多拷贝系统有效提高了TAL的产量,为S.cerevisiae异源途径的表达提供了一种高效、模块化的多拷贝整合方法。

本文引用格式

韦欢 , 林苹鑫 , 刘秀霞 , 刘春立 , 杨艳坤 , 李业 , 白仲虎 . 基于酿酒酵母多拷贝系统策略提高三乙酸内酯的产量[J]. 食品与发酵工业, 2025 , 51(4) : 1 -10 . DOI: 10.13995/j.cnki.11-1802/ts.038860

Abstract

Triacetic acid lactone (TAL) is a promising platform polyketide with broad applications, especially it can be used as a precursor for the synthesis of various organic compounds.This study characterized the repeating sequences on the yeast genome to integrate the TAL biosynthesis pathway into these sites for enhanced gene expression and TAL production by Saccharomyces cerevisiae.Firstly, this study used the green fluorescent protein as the reporter to characterize multi-copy integration by the Delta1 site.It showed that truncating the promoter of a selection marker gene (for geneticin or hygromycin B) or increasing the antibiotic concentration, were effective in improving the integration efficiency and copy numbers.The highest copy number of multi-copy integration was obtained when truncating the antibiotic gene promoter to 15 bp, and using an antibiotic at 160 μg/mL.The optimization system was subsequently used to characterize the second multi-copy integration site, Delta2, with similar results.Then, the optimized multi-copy integration system was applied to introduce the TAL biosynthesis pathway into S.cerevisiae.The highest pathway copies using Delta1 and Delta2 sequences were 10 and 7, respectively, with Delta1 slightly better than Delta2.After 48 h fermentation in YTD medium, TAL titers of the Delta1-integration strain and the Delta2-integration strain were 1.50 mmol/L and 1.17 mmol/L, respectively, 460% and 337% higher than the single-copy integration strain.This study demonstrates that the multi-copy integration system is an efficient approach to introducing heterologous pathways into S.cerevisiae to improve biocatalytic efficiency.

参考文献

[1] ECKERMANN S, SCHRÖDER G, SCHMIDT J, et al.New pathway to polyketides in plants[J].Nature, 1998, 396(6709):387-390.
[2] OBYDENNOV D L, EL-TANTAWY A I, SOSNOVSKIKH V Y.Triacetic acid lactone as a bioprivileged molecule in organic synthesis[J].Mendeleev Communications, 2019, 29(1):1-10.
[3] PALMER C M, ALPER H S.Expanding the chemical palette of industrial microbes:Metabolic engineering for type Ⅲ PKS-derived polyketides[J].Biotechnology Journal, 2019, 14(1):e1700463.
[4] HANSEN C A, FROST J W.Deoxygenation of polyhydroxybenzenes:An alternative strategy for the benzene-free synthesis of aromatic chemicals[J].Journal of the American Chemical Society, 2002, 124(21):5 926-5 927.
[5] 刘文杰, 左迎峰, 吴义强, 等.间苯二酚改性木材胶粘剂的研究进展[J].中国胶粘剂, 2017, 26(12):42-46.
LIU W J, ZUO Y F, WU Y Q, et al.Research progress of wood adhesives modified by resorcinol[J].China Adhesives, 2017, 26(12):42-46.
[6] KHAN F, TABASSUM N, BAMUNUARACHCHI N I, et al.Phloroglucinol and its derivatives:Antimicrobial properties toward microbial pathogens[J].Journal of Agricultural and Food Chemistry, 2022, 70(16):4817-4838.
[7] YU J, LANDBERG J, SHAVAREBI F, et al.Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis[J].Biotechnology and Bioengineering, 2018, 115(9):2383-2388.
[8] MEI C A, SCHWARTZ T J, SHANKS B H, et al.Triacetic acid lactone as a potential biorenewable platform chemical[J].Green Chemistry, 2012, 14(7):1850.
[9] ZHOU Y F, DING Y M, GAO W J, et al.Biosynthesis of acetylacetone inspired by its biodegradation[J].Biotechnology for Biofuels, 2020, 13:88.
[10] SCHWARTZ T J, JOHNSON R L, CARDENAS J, et al.Engineering catalyst microenvironments for metal-catalyzed hydrogenation of biologically derived platform chemicals[J].Angewandte Chemie International Edition, 2014, 53(47):12718-12722.
[11] XIE D M, SHAO Z Y, ACHKAR J, et al.Microbial synthesis of triacetic acid lactone[J].Biotechnology and Bioengineering, 2006, 93(4):727-736.
[12] LIU Y M, JIN Y H, XU P, et al.Recent advances and perspectives on the biomass-derived production of the platform chemical triacetic acid lactone by engineered cell factories[J].Biochemical Engineering Journal, 2023, 197:108961.
[13] LUO Y Z, LI B Z, LIU D, et al.Engineered biosynthesis of natural products in heterologous hosts[J].Chemical Society Reviews, 2015, 44(15):5265-5290.
[14] BOND C, TANG Y, LI L.Saccharomyces cerevisiae as a tool for mining, studying and engineering fungal polyketide synthases[J].Fungal Genetics and Biology, 2016, 89:52-61.
[15] CARDENAS J, DA SILVA N A.Engineering cofactor and transport mechanisms in Saccharomyces cerevisiae for enhanced acetyl-CoA and polyketide biosynthesis[J].Metabolic Engineering, 2016, 36:80-89.
[16] VICKERY C R, CARDENAS J, BOWMAN M E, et al.A coupled in vitro/in vivo approach for engineering a heterologous type III PKS to enhance polyketide biosynthesis in Saccharomyces cerevisiae[J].Biotechnology and Bioengineering, 2018, 115(6):1394-1402.
[17] SUN L, LEE J W, YOOK S, et al.Complete and efficient conversion of plant cell wall hemicellulose into high-value bioproducts by engineered yeast[J].Nature Communications, 2021, 12(1):4975.
[18] LIN P X, FU Z H, LIU X X, et al.Direct utilization of peroxisomal acetyl-CoA for the synthesis of polyketide compounds in Saccharomyces cerevisiae[J].ACS Synthetic Biology, 2023, 12(6):1599-1607.
[19] GNÜGGE R, RUDOLF F.Saccharomyces cerevisiae Shuttle vectors[J].Yeast, 2017, 34(5):205-221.
[20] GARFINKEL D J.Genome evolution mediated by Ty elements in Saccharomyces[J].Cytogenetic and Genome Research, 2005, 110(1-4):63-69.
[21] SHI S B, LIANG Y Y, ANG E L, et al.Delta integration CRISPR-Cas (Di-CRISPR) in Saccharomyces cerevisiae[J].Methods in Molecular Biology, 2019, 1927:73-91.
[22] LIAN J Z, JIN R, ZHAO H M.Construction of plasmids with tunable copy numbers in Saccharomyces cerevisiae and their applications in pathway optimization and multiplex genome integration[J].Biotechnology and Bioengineering, 2016, 113(11):2462-2473.
[23] LEE M E, DELOACHE W C, CERVANTES B, et al.A highly characterized yeast toolkit for modular, multipart assembly[J].ACS Synthetic Biology, 2015, 4(9):975-986.
[24] CHAN W T, VERMA C S, LANE D P, et al.A comparison and optimization of methods and factors affecting the transformation of Escherichia coli[J].Bioscience Reports, 2013, 33(6):e00086.
[25] LÕOKE M, KRISTJUHAN K, KRISTJUHAN A.Extraction of genomic DNA from yeasts for PCR-based applications[J].BioTechniques, 2011, 50(5):325-328.
[26] GIETZ R D, SCHIESTL R H.High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method[J].Nature Protocols, 2007, 2(1):31-34.
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