[1] FENG J, JIANG Y, LI M, et al. Diversity and evolution of Lactobacillus casei group isolated from fermented dairy products in Tibet[J]. Archives of Microbiology, 2018, 200(7): 1 111-1 121.
[2] TOH H, OSHIMA K, NAKANO A, et al. Genomic adaptation of the Lactobacillus casei group[J]. Plos One, 2013, 8(10): e75073.
[3] VERDENELLI M C, GHELFI F, SILVI S, et al. Probiotic properties of Lactobacillus rhamnosus and Lactobacillus paracasei isolated from human faeces[J]. European Journal of Nutrition, 2009, 48(6): 355-363.
[4] WANNUN P, PIWAT S, TEANPAISAN R. Purification and characterization of bacteriocin produced by oral Lactobacillus paracasei SD1[J]. Anaerobe, 2014, 27: 17-21.
[5] BALIZARETTI S,TAVERNITI V, RONDINI G, et al. The vaginal isolate Lactobacillus paracasei LPC-S01 (DSM 26760) is suitable for oral administration[J]. Frontiers in Microbiology, 2015, 6: 952.
[6] MIAO J, GUO H, OU Y, et al. Purification and characterization of bacteriocin F1, a novel bacteriocin produced by Lactobacillus paracasei subsp. tolerans FX-6 from Tibetan kefir, a traditional fermented milk from Tibet, China[J]. Food Control, 2014, 42:48-53.
[7] GE J, SUN Y, XIN X, et al. Purification and partial characterization of a novel bacteriocin synthesized by Lactobacillus paracasei HD1-7 isolated from Chinese sauerkraut juice[J]. Scientific Reports, 2016, 6: 19 366.
[8] HASSAN Y I, BULLERMAN L B. Antifungal activity of Lactobacillus paracasei ssp. tolerans isolated from a sourdough bread culture[J]. International Journal of Food Microbiology, 2008, 121(1): 112-115.
[9] MARZOTTO M, MAFFEIS C, PATERNOSTER T, et al. Lactobacillus paracasei A survives gastrointestinal passage and affects the fecal microbiota of healthy infants[J]. Research in Microbiology, 2006, 157(9): 857-866.
[10] RIZZARDINI G, ESKESEN D, CALDER P C, et al. Evaluation of the immune benefits of two probiotic strains Bifidobacterium animalis ssp. lactis, BB-12(R) and Lactobacillus paracasei ssp. paracasei, L.casei431(R) in an influenza vaccination model: A randomised, double-blind, placebo-controlled study[J]. British Journal of Nutrition, 2012, 107(6): 876-884.
[11] VERDENELLI M C, SILVI S, CECCHINI C, et al. Influence of a combination of two potential probiotic strains, Lactobacillus rhamnosus IMC 501® and Lactobacillus paracasei IMC 502® on bowel habits of healthy adults[J]. Letters in Applied Microbiology, 2011, 52(6): 596-602.
[12] STEFANOVIC E, KILCAWLEY K N, REA M C, et al. Genetic, enzymatic and metabolite profiling of the Lactobacillus casei, group reveals strain biodiversity and potential applications for flavour diversification[J]. Journal of Applied Microbiology, 2017, 122(5): 1 245-1 261.
[13] SMOKVINA T, WELS M, POLKA J, et al. Lactobacillus paracasei comparative genomics: Towards species pan-genome definition and exploitation of diversity[J]. Plos One, 2013, 8(7): e68731.
[14] BAO Q, SONG Y, XU H, et al. Multilocus sequence typing of Lactobacillus casei isolates from naturally fermented foods in China and Mongolia[J]. Journal of Dairy Science, 2016, 99(7): 5 202-5 213.
[15] SUN Z, HARRIS H M B, MCCANN A, et al. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera[J]. Nature Communications, 2015, 6: 8 322.
[16] TURNER P E, WILLIAMS E S C P, OKEKE C, et al. Antibiotic resistance correlates with transmission in plasmid evolution[J]. Evolution, 2014, 68(12): 3 368-3 380.
[17] YU J, SONG Y, REN Y, et al. Genome-level comparisons provide insight into the phylogeny and metabolic diversity of species within the genus Lactococcus[J]. BMC Microbiology, 2017, 17(1): 213.
[18] LUO R, LIU B, XIE Y, et al. SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler[J]. GigaScience, 2012, 4(1): S13742-015.
[19] BORODOVSKY M, MILLS R, BESEMER J, et al. Prokaryoticgene prediction using Genemark and Genemark.hmm[J]. Current protocols in bioinformatics, 2003, 1(1):4-5.
[20] AZIZ R K, BARTELS D, BEST A A, et al. The RAST server: Rapid annotations using subsystems technology[J]. BMC Genomics, 2008, 9(1): 75.
[21] ZHAO Y, WU J, YANG J, et al. PGAP: Pan-genomes analysis pipeline[J]. Bioinformatics, 2011, 28(3): 416-418.
[22] KATOH K, MISAWA K, KUMA K, et al. MAFFT: A novel method for rapid multiple sequence alignment based on fast fourier transform[J]. Nucleic Acids Research, 2002, 30(14):3 059-3 066.
[23] RETIEF J D. Phylogenetic analysis using PHYLIP[J]. Methods in molecular biology, 1999,132(132):243-258.
[24] SAITOU N. The neighbour-joining method: A new method for reconstructing phylogenetic trees[J]. Molecular Biology and Evolution, 1987, 10: 471-483.
[25] MCARTHUR A G, WAGLECHNER N, NIZAM F, et al. The comprehensive antibiotic resistance database[J]. Antimicrobial Agents and Chemotherapy, 2013, 57(7): 3 348-3 357.
[26] EFSA Panel on Additives and Products of Substances used in Amimal Feed (FEEDAP). Guidance on the assessment of bacterial susceptibility to antimicrobials of human and veterinary importance[J]. EFSA Journal, 2012, 10(6): 2 740.
[27] MEDINI D, DONATI C, TETTELIN H, et al. The microbial pan-genome [J]. Current Opinion in Genetics & Development, 2005, 15(6): 589-594.
[28] TETTELIN H, MASIGNANI V, CIESLEWICZ M, et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pan-genome″[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(39): 13 950-13 955.
[29] 王彦杰.粪肠球菌乳源分离株与其它环境分离株基因组比较分析[D]. 内蒙古:内蒙古农业大学,2018.
[30] BONACINA J, SUÁREZ N, HORMIGO R, et al. A genomic view of food-related and probiotic Enterococcus strains[J]. DNA Research, 2016, 24(1): 11-24.
[31] SHAO Y, ZHANG W, GUO H, et al. Comparative studies on antibiotic resistance in Lactobacillus casei and Lactobacillus plantarum[J]. Food Control, 2015, 50: 250-258.
[32] DANIELSEN M, WIND A. Susceptibility of Lactobacillus spp. to antimicrobial agents[J]. International Journal of Food Microbiology, 2003, 82(1): 1-11.
